SCOP 1.69: Protein: Seed storage 7S protein

Lineage for Protein: Seed storage 7S protein

Root: SCOP 1.69
Class b: All beta proteins [48724] (144 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.1: RmlC-like cupins [51182] (13 families)
Family b.82.1.2: Germin/Seed storage 7S protein [51187] (4 proteins)
Protein Seed storage 7S protein [51188] (6 species)
duplication: consists of two germin-like domains spatially arranged as subunits in the RmlC dimer; trimer is similar to the germin hexamer

Species:

beta-conglycinin beta subunit [109608] (3 PDB entries)
1. Domains for 1ipj:
  1. Domain d1ipja1: 1ipj A:9-176 [71258]
  2. Domain d1ipja2: 1ipj A:183-393 [71259]
  3. Domain d1ipjb1: 1ipj B:9-175 [71260]
  4. Domain d1ipjb2: 1ipj B:186-393 [71261]
  5. Domain d1ipjc1: 1ipj C:9-177 [71262]
  6. Domain d1ipjc2: 1ipj C:181-393 [71263]
2. Domains for 1ipk:
  1. Domain d1ipka1: 1ipk A:8-174 [71264]
  2. Domain d1ipka2: 1ipk A:183-392 [71265]
  3. Domain d1ipkb1: 1ipk B:9-174 [71266]
  4. Domain d1ipkb2: 1ipk B:183-392 [71267]
  5. Domain d1ipkc1: 1ipk C:3-180 [71268]
  6. Domain d1ipkc2: 1ipk C:181-392 [71269]
3. Domains for 1uij:
  1. Domain d1uija1: 1uij A:6-175 [107866]
  2. Domain d1uija2: 1uij A:183-392 [107867]
  3. Domain d1uijb1: 1uij B:6-175 [107868]
  4. Domain d1uijb2: 1uij B:183-392 [107869]
  5. Domain d1uijc1: 1uij C:6-175 [107870]
  6. Domain d1uijc2: 1uij C:183-392 [107871]
  7. Domain d1uijd1: 1uij D:6-175 [107872]
  8. Domain d1uijd2: 1uij D:183-392 [107873]
  9. Domain d1uije1: 1uij E:6-175 [107874]
  10. Domain d1uije2: 1uij E:183-392 [107875]
  11. Domain d1uijf1: 1uij F:6-175 [107876]
  12. Domain d1uijf2: 1uij F:183-392 [107877]
French bean (Phaseolus vulgaris), phaseolin [TaxId:3885] [51189] (2 PDB entries)
1. Domains for 1phs:
  1. Domain d1phs_1: 1phs 11-212 [28088]
  2. Domain d1phs_2: 1phs 220-381 [28089]
    CA-atoms only
2. Domains for 2phl:
  1. Domain d2phla1: 2phl A:11-210 [28082]
  2. Domain d2phla2: 2phl A:220-381 [28083]
  3. Domain d2phlb1: 2phl B:11-210 [28084]
  4. Domain d2phlb2: 2phl B:220-381 [28085]
  5. Domain d2phlc1: 2phl C:10-210 [28086]
  6. Domain d2phlc2: 2phl C:220-381 [28087]
Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId:3823] [51190] (8 PDB entries)
1. Domains for 1cau:
  1. Domain d1caua_: 1cau A: [28102]
  2. Domain d1caub_: 1cau B: [28103]
2. Domains for 1cav:
  1. Domain d1cava_: 1cav A: [28110]
  2. Domain d1cavb_: 1cav B: [28111]
3. Domains for 1caw:
  1. Domain d1cawa_: 1caw A: [28112]
  2. Domain d1cawb_: 1caw B: [28113]
4. Domains for 1cax:
  1. Domain d1caxa_: 1cax A: [28104]
  2. Domain d1caxb_: 1cax B: [28105]
  3. Domain d1caxc_: 1cax C: [28106]
  4. Domain d1caxd_: 1cax D: [28107]
  5. Domain d1caxe_: 1cax E: [28108]
  6. Domain d1caxf_: 1cax F: [28109]
5. Domains for 1dgr:
  1. Domain d1dgr.1: 1dgr X:,Y: [28097]
  2. Domain d1dgr.2: 1dgr V:,W: [28099]
  3. Domain d1dgr.3: 1dgr M:,N: [28101]
  4. Domain d1dgra_: 1dgr A: [28096]
  5. Domain d1dgrb_: 1dgr B: [28098]
  6. Domain d1dgrc_: 1dgr C: [28100]
6. Domains for 1dgw:
  1. Domain d1dgw.1: 1dgw X:,Y: [28091]
  2. Domain d1dgwa_: 1dgw A: [28090]
7. Domains for 2cau:
  1. Domain d2caua1: 2cau A:46-223 [28092]
  2. Domain d2caua2: 2cau A:246-421 [28093]
8. Domains for 2cav:
  1. Domain d2cava1: 2cav A:46-225 [28094]
  2. Domain d2cava2: 2cav A:246-422 [28095]
Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId:3847] [110313] (1 PDB entry)
- Domains for 1uik:
  1. Domain d1uika1: 1uik A:148-350 [107878]
  2. Domain d1uika2: 1uik A:351-535 [107879]
  3. Domain d1uikb1: 1uik B:148-350 [107880]
  4. Domain d1uikb2: 1uik B:351-535 [107881]
  5. Domain d1uikc1: 1uik C:148-350 [107882]
  6. Domain d1uikc2: 1uik C:351-535 [107883]
Soybean (Glycine max), glycinin A3B4 [TaxId:3847] [89412] (1 PDB entry)
- Domains for 1od5:
  1. Domain d1od5a1: 1od5 A:7-251 [86832]
  2. Domain d1od5a2: 1od5 A:321-493 [86833]
  3. Domain d1od5b1: 1od5 B:7-251 [86834]
  4. Domain d1od5b2: 1od5 B:321-493 [86835]
Soybean (Glycine max), proglycinin [TaxId:3847] [69345] (3 PDB entries)
1. Domains for 1fxz:
  1. Domain d1fxza1: 1fxz A:10-248 [65059]
  2. Domain d1fxza2: 1fxz A:297-470 [65060]
  3. Domain d1fxzb1: 1fxz B:10-248 [65061]
  4. Domain d1fxzb2: 1fxz B:297-470 [65062]
  5. Domain d1fxzc1: 1fxz C:10-248 [65063]
  6. Domain d1fxzc2: 1fxz C:297-470 [65064]
2. Domains for 1ucx:
  1. Domain d1ucxa1: 1ucx A:14-248 [99192]
  2. Domain d1ucxa2: 1ucx A:297-470 [99193]
  3. Domain d1ucxb1: 1ucx B:14-248 [99194]
  4. Domain d1ucxb2: 1ucx B:297-470 [99195]
  5. Domain d1ucxc1: 1ucx C:14-248 [99196]
  6. Domain d1ucxc2: 1ucx C:297-470 [99197]
3. Domains for 1ud1:
  1. Domain d1ud1a1: 1ud1 A:10-248 [99202]
  2. Domain d1ud1a2: 1ud1 A:297-470 [99203]
  3. Domain d1ud1b1: 1ud1 B:10-248 [99204]
  4. Domain d1ud1b2: 1ud1 B:297-470 [99205]
  5. Domain d1ud1c1: 1ud1 C:10-248 [99206]
  6. Domain d1ud1c2: 1ud1 C:297-470 [99207]

More info for Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein

Timeline for Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein:

Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein first appeared (with stable ids) in SCOP 1.55
Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein appears in SCOP 1.67
Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein appears in SCOP 1.71
Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein appears in the current release, SCOPe 2.08