Lineage for Protein: Seed storage 7S protein

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2814470Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2814471Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)
  5. 2814551Family b.82.1.2: Germin/Seed storage 7S protein [51187] (5 proteins)
    has additional insertions and/or extensions that are not grouped together
  6. 2814575Protein Seed storage 7S protein [51188] (6 species)
    duplication: consists of two germin-like domains spatially arranged as subunits in the RmlC dimer; trimer is similar to the germin hexamer

Species:

  1. 2814576French bean (Phaseolus vulgaris), phaseolin [TaxId:3885] [51189] (2 PDB entries)
    1. Domains for 1phs:
      1. 2814583Domain d1phsa1: 1phs A:11-212 [28088]
        CA-atoms only
      2. 2814584Domain d1phsa2: 1phs A:220-381 [28089]
        CA-atoms only
    2. Domains for 2phl:
      1. 2814577Domain d2phla1: 2phl A:11-210 [28082]
        complexed with nag, po4
      2. 2814578Domain d2phla2: 2phl A:220-381 [28083]
        complexed with nag, po4
      3. 2814579Domain d2phlb1: 2phl B:11-210 [28084]
        complexed with nag, po4
      4. 2814580Domain d2phlb2: 2phl B:220-381 [28085]
        complexed with nag, po4
      5. 2814581Domain d2phlc1: 2phl C:10-210 [28086]
        complexed with nag, po4
      6. 2814582Domain d2phlc2: 2phl C:220-381 [28087]
        complexed with nag, po4
  2. 2814585Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId:3823] [51190] (11 PDB entries)
    1. Domains for 1cau:
      1. 2814606Domain d1caua_: 1cau A: [28102]
      2. 2814607Domain d1caub_: 1cau B: [28103]
    2. Domains for 1cav:
      1. 2814614Domain d1cava_: 1cav A: [28110]
      2. 2814615Domain d1cavb_: 1cav B: [28111]
    3. Domains for 1caw:
      1. 2814616Domain d1cawa_: 1caw A: [28112]
      2. 2814617Domain d1cawb_: 1caw B: [28113]
    4. Domains for 1cax:
      1. 2814608Domain d1caxa_: 1cax A: [28104]
      2. 2814609Domain d1caxb_: 1cax B: [28105]
      3. 2814610Domain d1caxc_: 1cax C: [28106]
      4. 2814611Domain d1caxd_: 1cax D: [28107]
      5. 2814612Domain d1caxe_: 1cax E: [28108]
      6. 2814613Domain d1caxf_: 1cax F: [28109]
    5. Domains for 1dgr:
      1. 2814592Domain d1dgr.1: 1dgr X:,Y: [28097]
        complexed with po4
      2. 2814593Domain d1dgr.2: 1dgr V:,W: [28099]
        complexed with po4
      3. 2814594Domain d1dgr.4: 1dgr N:,M: [144355]
        complexed with po4
      4. 2814595Domain d1dgra_: 1dgr A: [28096]
        complexed with po4
      5. 2814596Domain d1dgrb_: 1dgr B: [28098]
        complexed with po4
      6. 2814597Domain d1dgrc_: 1dgr C: [28100]
        complexed with po4
    6. Domains for 1dgw:
      1. 2814588Domain d1dgw.1: 1dgw X:,Y: [28091]
        complexed with po4
      2. 2814589Domain d1dgwa_: 1dgw A: [28090]
        complexed with po4
    7. Domains for 2cau:
      1. 2814590Domain d2caua1: 2cau A:46-223 [28092]
      2. 2814591Domain d2caua2: 2cau A:246-421 [28093]
    8. Domains for 2cav:
      1. 2814604Domain d2cava1: 2cav A:46-225 [28094]
      2. 2814605Domain d2cava2: 2cav A:246-422 [28095]
    9. Domains for 6v7g:
      1. 2814586Domain d6v7ga1: 6v7g A:46-225 [381197]
        automated match to d2cava1
        complexed with act, bez, cit
      2. 2814587Domain d6v7ga2: 6v7g A:241-424 [381198]
        automated match to d2cava2
        complexed with act, bez, cit
    10. Domains for 6v7j:
      1. 2814598Domain d6v7ja1: 6v7j A:46-223 [381205]
        automated match to d2cava1
        complexed with bez, ca, gol
      2. 2814599Domain d6v7ja2: 6v7j A:245-424 [381206]
        automated match to d2cava2
        complexed with bez, ca, gol
      3. 2814600Domain d6v7jb1: 6v7j B:46-225 [381251]
        automated match to d2cava1
        complexed with bez, ca, gol
      4. 2814601Domain d6v7jb2: 6v7j B:246-424 [381252]
        automated match to d2cava2
        complexed with bez, ca, gol
      5. 2814602Domain d6v7jc1: 6v7j C:46-227 [381262]
        automated match to d2cava1
        complexed with bez, ca, gol
      6. 2814603Domain d6v7jc2: 6v7j C:246-424 [381263]
        automated match to d2cava2
        complexed with bez, ca, gol
    11. Domains for 6v7l:
      1. 2814618Domain d6v7la1: 6v7l A:46-223 [381193]
        automated match to d2cava1
        complexed with bez
      2. 2814619Domain d6v7la2: 6v7l A:246-424 [381194]
        automated match to d2cava2
        complexed with bez
      3. 2814620Domain d6v7lb1: 6v7l B:46-226 [381191]
        automated match to d2cava1
        complexed with bez
      4. 2814621Domain d6v7lb2: 6v7l B:246-424 [381192]
        automated match to d2cava2
        complexed with bez
      5. 2814622Domain d6v7lc1: 6v7l C:46-225 [381199]
        automated match to d2cava1
        complexed with bez
      6. 2814623Domain d6v7lc2: 6v7l C:246-424 [381200]
        automated match to d2cava2
        complexed with bez
  3. 2814624Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId:3847] [110313] (1 PDB entry)
    Uniprot Q7XXT2 204-621
  4. 2814631Soybean (Glycine max), beta-conglycinin beta subunit [TaxId:3847] [109608] (3 PDB entries)
    Uniprot P25974
    1. Domains for 1ipj:
      1. 2814644Domain d1ipja1: 1ipj A:9-176 [71258]
        complexed with nag
      2. 2814645Domain d1ipja2: 1ipj A:183-393 [71259]
        complexed with nag
      3. 2814646Domain d1ipjb1: 1ipj B:9-175 [71260]
        complexed with nag
      4. 2814647Domain d1ipjb2: 1ipj B:186-393 [71261]
        complexed with nag
      5. 2814648Domain d1ipjc1: 1ipj C:9-177 [71262]
        complexed with nag
      6. 2814649Domain d1ipjc2: 1ipj C:181-393 [71263]
        complexed with nag
    2. Domains for 1ipk:
      1. 2814650Domain d1ipka1: 1ipk A:8-174 [71264]
      2. 2814651Domain d1ipka2: 1ipk A:183-392 [71265]
      3. 2814652Domain d1ipkb1: 1ipk B:9-174 [71266]
      4. 2814653Domain d1ipkb2: 1ipk B:183-392 [71267]
      5. 2814654Domain d1ipkc1: 1ipk C:3-180 [71268]
      6. 2814655Domain d1ipkc2: 1ipk C:181-392 [71269]
    3. Domains for 1uij:
      1. 2814632Domain d1uija1: 1uij A:6-175 [107866]
      2. 2814633Domain d1uija2: 1uij A:183-392 [107867]
      3. 2814634Domain d1uijb1: 1uij B:6-175 [107868]
      4. 2814635Domain d1uijb2: 1uij B:183-392 [107869]
      5. 2814636Domain d1uijc1: 1uij C:6-175 [107870]
      6. 2814637Domain d1uijc2: 1uij C:183-392 [107871]
      7. 2814638Domain d1uijd1: 1uij D:6-175 [107872]
      8. 2814639Domain d1uijd2: 1uij D:183-392 [107873]
      9. 2814640Domain d1uije1: 1uij E:6-175 [107874]
      10. 2814641Domain d1uije2: 1uij E:183-392 [107875]
      11. 2814642Domain d1uijf1: 1uij F:6-175 [107876]
      12. 2814643Domain d1uijf2: 1uij F:183-392 [107877]
  5. 2814656Soybean (Glycine max), glycinin A3B4 [TaxId:3847] [89412] (1 PDB entry)
  6. 2814661Soybean (Glycine max), proglycinin [TaxId:3847] [69345] (3 PDB entries)
    1. Domains for 1fxz:
      1. 2814662Domain d1fxza1: 1fxz A:10-248 [65059]
      2. 2814663Domain d1fxza2: 1fxz A:297-470 [65060]
      3. 2814664Domain d1fxzb1: 1fxz B:10-248 [65061]
      4. 2814665Domain d1fxzb2: 1fxz B:297-470 [65062]
      5. 2814666Domain d1fxzc1: 1fxz C:10-248 [65063]
      6. 2814667Domain d1fxzc2: 1fxz C:297-470 [65064]
    2. Domains for 1ucx:
      1. 2814668Domain d1ucxa1: 1ucx A:14-248 [99192]
        mutant
      2. 2814669Domain d1ucxa2: 1ucx A:297-470 [99193]
        mutant
      3. 2814670Domain d1ucxb1: 1ucx B:14-248 [99194]
        mutant
      4. 2814671Domain d1ucxb2: 1ucx B:297-470 [99195]
        mutant
      5. 2814672Domain d1ucxc1: 1ucx C:14-248 [99196]
        mutant
      6. 2814673Domain d1ucxc2: 1ucx C:297-470 [99197]
        mutant
    3. Domains for 1ud1:
      1. 2814674Domain d1ud1a1: 1ud1 A:10-248 [99202]
        mutant
      2. 2814675Domain d1ud1a2: 1ud1 A:297-470 [99203]
        mutant
      3. 2814676Domain d1ud1b1: 1ud1 B:10-248 [99204]
        mutant
      4. 2814677Domain d1ud1b2: 1ud1 B:297-470 [99205]
        mutant
      5. 2814678Domain d1ud1c1: 1ud1 C:10-248 [99206]
        mutant
      6. 2814679Domain d1ud1c2: 1ud1 C:297-470 [99207]
        mutant

More info for Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein

Timeline for Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein: