Lineage for Protein: Seed storage 7S protein

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070015Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)
  5. 2070093Family b.82.1.2: Germin/Seed storage 7S protein [51187] (5 protein domains)
  6. 2070117Protein Seed storage 7S protein [51188] (6 species)
    duplication: consists of two germin-like domains spatially arranged as subunits in the RmlC dimer; trimer is similar to the germin hexamer

Species:

  1. 2070118French bean (Phaseolus vulgaris), phaseolin [TaxId:3885] [51189] (2 PDB entries)
    1. Domains for 1phs:
      1. 2070125Domain d1phsa1: 1phs A:11-212 [28088]
        CA-atoms only
      2. 2070126Domain d1phsa2: 1phs A:220-381 [28089]
        CA-atoms only
    2. Domains for 2phl:
      1. 2070119Domain d2phla1: 2phl A:11-210 [28082]
        complexed with nag, po4
      2. 2070120Domain d2phla2: 2phl A:220-381 [28083]
        complexed with nag, po4
      3. 2070121Domain d2phlb1: 2phl B:11-210 [28084]
        complexed with nag, po4
      4. 2070122Domain d2phlb2: 2phl B:220-381 [28085]
        complexed with nag, po4
      5. 2070123Domain d2phlc1: 2phl C:10-210 [28086]
        complexed with nag, po4
      6. 2070124Domain d2phlc2: 2phl C:220-381 [28087]
        complexed with nag, po4
  2. 2070127Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId:3823] [51190] (8 PDB entries)
    1. Domains for 1cau:
      1. 2070140Domain d1caua_: 1cau A: [28102]
      2. 2070141Domain d1caub_: 1cau B: [28103]
    2. Domains for 1cav:
      1. 2070148Domain d1cava_: 1cav A: [28110]
      2. 2070149Domain d1cavb_: 1cav B: [28111]
    3. Domains for 1caw:
      1. 2070150Domain d1cawa_: 1caw A: [28112]
      2. 2070151Domain d1cawb_: 1caw B: [28113]
    4. Domains for 1cax:
      1. 2070142Domain d1caxa_: 1cax A: [28104]
      2. 2070143Domain d1caxb_: 1cax B: [28105]
      3. 2070144Domain d1caxc_: 1cax C: [28106]
      4. 2070145Domain d1caxd_: 1cax D: [28107]
      5. 2070146Domain d1caxe_: 1cax E: [28108]
      6. 2070147Domain d1caxf_: 1cax F: [28109]
    5. Domains for 1dgr:
      1. 2070134Domain d1dgr.1: 1dgr X:,Y: [28097]
        complexed with po4
      2. 2070135Domain d1dgr.2: 1dgr V:,W: [28099]
        complexed with po4
      3. 2070136Domain d1dgr.4: 1dgr N:,M: [144355]
        complexed with po4
      4. 2070137Domain d1dgra_: 1dgr A: [28096]
        complexed with po4
      5. 2070138Domain d1dgrb_: 1dgr B: [28098]
        complexed with po4
      6. 2070139Domain d1dgrc_: 1dgr C: [28100]
        complexed with po4
    6. Domains for 1dgw:
      1. 2070128Domain d1dgw.1: 1dgw X:,Y: [28091]
        complexed with po4
      2. 2070129Domain d1dgwa_: 1dgw A: [28090]
        complexed with po4
    7. Domains for 2cau:
      1. 2070130Domain d2caua1: 2cau A:46-223 [28092]
      2. 2070131Domain d2caua2: 2cau A:246-421 [28093]
    8. Domains for 2cav:
      1. 2070132Domain d2cava1: 2cav A:46-225 [28094]
      2. 2070133Domain d2cava2: 2cav A:246-422 [28095]
  3. 2070152Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId:3847] [110313] (1 PDB entry)
    Uniprot Q7XXT2 204-621
  4. 2070159Soybean (Glycine max), beta-conglycinin beta subunit [TaxId:3847] [109608] (3 PDB entries)
    Uniprot P25974
    1. Domains for 1ipj:
      1. 2070172Domain d1ipja1: 1ipj A:9-176 [71258]
        complexed with nag
      2. 2070173Domain d1ipja2: 1ipj A:183-393 [71259]
        complexed with nag
      3. 2070174Domain d1ipjb1: 1ipj B:9-175 [71260]
        complexed with nag
      4. 2070175Domain d1ipjb2: 1ipj B:186-393 [71261]
        complexed with nag
      5. 2070176Domain d1ipjc1: 1ipj C:9-177 [71262]
        complexed with nag
      6. 2070177Domain d1ipjc2: 1ipj C:181-393 [71263]
        complexed with nag
    2. Domains for 1ipk:
      1. 2070178Domain d1ipka1: 1ipk A:8-174 [71264]
      2. 2070179Domain d1ipka2: 1ipk A:183-392 [71265]
      3. 2070180Domain d1ipkb1: 1ipk B:9-174 [71266]
      4. 2070181Domain d1ipkb2: 1ipk B:183-392 [71267]
      5. 2070182Domain d1ipkc1: 1ipk C:3-180 [71268]
      6. 2070183Domain d1ipkc2: 1ipk C:181-392 [71269]
    3. Domains for 1uij:
      1. 2070160Domain d1uija1: 1uij A:6-175 [107866]
      2. 2070161Domain d1uija2: 1uij A:183-392 [107867]
      3. 2070162Domain d1uijb1: 1uij B:6-175 [107868]
      4. 2070163Domain d1uijb2: 1uij B:183-392 [107869]
      5. 2070164Domain d1uijc1: 1uij C:6-175 [107870]
      6. 2070165Domain d1uijc2: 1uij C:183-392 [107871]
      7. 2070166Domain d1uijd1: 1uij D:6-175 [107872]
      8. 2070167Domain d1uijd2: 1uij D:183-392 [107873]
      9. 2070168Domain d1uije1: 1uij E:6-175 [107874]
      10. 2070169Domain d1uije2: 1uij E:183-392 [107875]
      11. 2070170Domain d1uijf1: 1uij F:6-175 [107876]
      12. 2070171Domain d1uijf2: 1uij F:183-392 [107877]
  5. 2070184Soybean (Glycine max), glycinin A3B4 [TaxId:3847] [89412] (1 PDB entry)
  6. 2070189Soybean (Glycine max), proglycinin [TaxId:3847] [69345] (3 PDB entries)
    1. Domains for 1fxz:
      1. 2070190Domain d1fxza1: 1fxz A:10-248 [65059]
      2. 2070191Domain d1fxza2: 1fxz A:297-470 [65060]
      3. 2070192Domain d1fxzb1: 1fxz B:10-248 [65061]
      4. 2070193Domain d1fxzb2: 1fxz B:297-470 [65062]
      5. 2070194Domain d1fxzc1: 1fxz C:10-248 [65063]
      6. 2070195Domain d1fxzc2: 1fxz C:297-470 [65064]
    2. Domains for 1ucx:
      1. 2070196Domain d1ucxa1: 1ucx A:14-248 [99192]
        mutant
      2. 2070197Domain d1ucxa2: 1ucx A:297-470 [99193]
        mutant
      3. 2070198Domain d1ucxb1: 1ucx B:14-248 [99194]
        mutant
      4. 2070199Domain d1ucxb2: 1ucx B:297-470 [99195]
        mutant
      5. 2070200Domain d1ucxc1: 1ucx C:14-248 [99196]
        mutant
      6. 2070201Domain d1ucxc2: 1ucx C:297-470 [99197]
        mutant
    3. Domains for 1ud1:
      1. 2070202Domain d1ud1a1: 1ud1 A:10-248 [99202]
        mutant
      2. 2070203Domain d1ud1a2: 1ud1 A:297-470 [99203]
        mutant
      3. 2070204Domain d1ud1b1: 1ud1 B:10-248 [99204]
        mutant
      4. 2070205Domain d1ud1b2: 1ud1 B:297-470 [99205]
        mutant
      5. 2070206Domain d1ud1c1: 1ud1 C:10-248 [99206]
        mutant
      6. 2070207Domain d1ud1c2: 1ud1 C:297-470 [99207]
        mutant

More info for Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein

Timeline for Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein: