Lineage for Protein: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070015Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)
  5. 2070016Family b.82.1.1: dTDP-sugar isomerase [51183] (5 protein domains)
  6. 2070017Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [51184] (6 species)
    synonym: dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase

Species:

  1. 2070018Methanobacterium thermoautotrophicum [TaxId:145262] [51186] (2 PDB entries)
    1. Domain for 1ep0:
    2. Domain for 1epz:
  2. 2070021Mycobacterium tuberculosis [TaxId:1773] [101971] (3 PDB entries)
    1. Domains for 1pm7:
      1. 2070027Domain d1pm7a_: 1pm7 A: [94895]
        complexed with act, gol
      2. 2070028Domain d1pm7b_: 1pm7 B: [94896]
        complexed with act, gol
    2. Domain for 1upi:
    3. Domains for 2ixc:
      1. 2070022Domain d2ixca_: 2ixc A: [137765]
        automated match to d1upia_
        complexed with trh
      2. 2070023Domain d2ixcb_: 2ixc B: [137766]
        automated match to d1upia_
        complexed with trh
      3. 2070024Domain d2ixcc_: 2ixc C: [137767]
        automated match to d1upia_
        complexed with trh
      4. 2070025Domain d2ixcd_: 2ixc D: [137768]
        automated match to d1upia_
        complexed with trh
  3. 2070029Pseudomonas aeruginosa [TaxId:287] [101972] (5 PDB entries)
    1. Domain for 1rtv:
    2. Domains for 2ixh:
      1. 2070034Domain d2ixha2: 2ixh A:4-184 [137769]
        Other proteins in same PDB: d2ixha3, d2ixhb3
        automated match to d1rtva_
        complexed with trh
      2. 2070035Domain d2ixhb2: 2ixh B:4-184 [137770]
        Other proteins in same PDB: d2ixha3, d2ixhb3
        automated match to d1rtva_
        complexed with trh
    3. Domains for 2ixi:
      1. 2070032Domain d2ixia_: 2ixi A: [165737]
        automated match to d1rtva_
        complexed with srt, tyd
      2. 2070033Domain d2ixib_: 2ixi B: [165738]
        automated match to d1rtva_
        complexed with srt, tyd
    4. Domain for 2ixj:
    5. Domains for 2ixk:
      1. 2070030Domain d2ixka_: 2ixk A: [165739]
        automated match to d1rtva_
        complexed with tdo
      2. 2070031Domain d2ixkb_: 2ixk B: [165740]
        automated match to d1rtva_
        complexed with tdo
  4. 2070038Salmonella typhimurium [TaxId:90371] [51185] (2 PDB entries)
    1. Domains for 1dzr:
      1. 2070041Domain d1dzra_: 1dzr A: [28076]
        complexed with gol, so4
      2. 2070042Domain d1dzrb_: 1dzr B: [28077]
        complexed with gol, so4
    2. Domains for 1dzt:
      1. 2070039Domain d1dzta_: 1dzt A: [28078]
        complexed with aty, gol, so4, tpe
      2. 2070040Domain d1dztb_: 1dzt B: [28079]
        complexed with aty, gol, so4, tpe
  5. 2070043Streptococcus suis [TaxId:1307] [89402] (4 PDB entries)
    1. Domains for 1nxm:
      1. 2070044Domain d1nxma_: 1nxm A: [86385]
      2. 2070045Domain d1nxmb_: 1nxm B: [86386]
    2. Domains for 1nyw:
      1. 2070050Domain d1nywa_: 1nyw A: [86429]
        complexed with dau
      2. 2070051Domain d1nywb_: 1nyw B: [86430]
        complexed with dau
    3. Domains for 1nzc:
      1. 2070052Domain d1nzca_: 1nzc A: [86445]
        complexed with ni, tdx
      2. 2070053Domain d1nzcb_: 1nzc B: [86446]
        complexed with ni, tdx
      3. 2070054Domain d1nzcc_: 1nzc C: [86447]
        complexed with ni, tdx
      4. 2070055Domain d1nzcd_: 1nzc D: [86448]
        complexed with ni, tdx
    4. Domains for 2ixl:
      1. 2070046Domain d2ixla_: 2ixl A: [137772]
        automated match to d1nzca_
        complexed with ni, trh
      2. 2070047Domain d2ixlb_: 2ixl B: [137773]
        automated match to d1nzca_
        complexed with ni, trh
      3. 2070048Domain d2ixlc_: 2ixl C: [137774]
        automated match to d1nzca_
        complexed with ni, trh
      4. 2070049Domain d2ixld_: 2ixl D: [137775]
        automated match to d1nzca_
        complexed with ni, trh
  6. 2070056Sulfolobus tokodaii [TaxId:111955] [141586] (2 PDB entries)
    Uniprot Q96Z62 1-176
    1. Domains for 1wlt:
      1. 2070057Domain d1wlta1: 1wlt A:1-176 [121013]
      2. 2070058Domain d1wltb_: 1wlt B: [121014]
        automated match to d1wlta1
    2. Domains for 2b9u:
      1. 2070059Domain d2b9ua_: 2b9u A: [163018]
        automated match to d1wlta1
      2. 2070060Domain d2b9ub_: 2b9u B: [163019]
        automated match to d1wlta1
      3. 2070061Domain d2b9uc_: 2b9u C: [163020]
        automated match to d1wlta1
      4. 2070062Domain d2b9ud_: 2b9u D: [163021]
        automated match to d1wlta1
      5. 2070063Domain d2b9ue_: 2b9u E: [163022]
        automated match to d1wlta1
      6. 2070064Domain d2b9uf_: 2b9u F: [163023]
        automated match to d1wlta1
      7. 2070065Domain d2b9ug_: 2b9u G: [163024]
        automated match to d1wlta1
      8. 2070066Domain d2b9uh_: 2b9u H: [163025]
        automated match to d1wlta1
      9. 2070067Domain d2b9ui_: 2b9u I: [163026]
        automated match to d1wlta1
      10. 2070068Domain d2b9uj_: 2b9u J: [163027]
        automated match to d1wlta1
      11. 2070069Domain d2b9uk_: 2b9u K: [163028]
        automated match to d1wlta1
      12. 2070070Domain d2b9ul_: 2b9u L: [163029]
        automated match to d1wlta1

More info for Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC from b.82.1.1: dTDP-sugar isomerase

Timeline for Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC from b.82.1.1: dTDP-sugar isomerase: