Lineage for Protein: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2403752Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)
  5. 2403753Family b.82.1.1: dTDP-sugar isomerase [51183] (5 protein domains)
  6. 2403754Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [51184] (6 species)
    synonym: dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase

Species:

  1. 2403755Methanobacterium thermoautotrophicum [TaxId:145262] [51186] (2 PDB entries)
    1. Domain for 1ep0:
    2. Domain for 1epz:
  2. 2403758Mycobacterium tuberculosis [TaxId:1773] [101971] (3 PDB entries)
    1. Domains for 1pm7:
      1. 2403764Domain d1pm7a_: 1pm7 A: [94895]
        complexed with act, gol
      2. 2403765Domain d1pm7b_: 1pm7 B: [94896]
        complexed with act, gol
    2. Domain for 1upi:
    3. Domains for 2ixc:
      1. 2403759Domain d2ixca_: 2ixc A: [137765]
        automated match to d1upia_
        complexed with trh
      2. 2403760Domain d2ixcb_: 2ixc B: [137766]
        automated match to d1upia_
        complexed with trh
      3. 2403761Domain d2ixcc_: 2ixc C: [137767]
        automated match to d1upia_
        complexed with trh
      4. 2403762Domain d2ixcd_: 2ixc D: [137768]
        automated match to d1upia_
        complexed with trh
  3. 2403766Pseudomonas aeruginosa [TaxId:287] [101972] (5 PDB entries)
    1. Domain for 1rtv:
    2. Domains for 2ixh:
      1. 2403771Domain d2ixha2: 2ixh A:4-184 [137769]
        Other proteins in same PDB: d2ixha3, d2ixhb3
        automated match to d1rtva_
        complexed with trh
      2. 2403772Domain d2ixhb2: 2ixh B:4-184 [137770]
        Other proteins in same PDB: d2ixha3, d2ixhb3
        automated match to d1rtva_
        complexed with trh
    3. Domains for 2ixi:
      1. 2403769Domain d2ixia_: 2ixi A: [165737]
        automated match to d1rtva_
        complexed with srt, tyd
      2. 2403770Domain d2ixib_: 2ixi B: [165738]
        automated match to d1rtva_
        complexed with srt, tyd
    4. Domain for 2ixj:
    5. Domains for 2ixk:
      1. 2403767Domain d2ixka_: 2ixk A: [165739]
        automated match to d1rtva_
        complexed with tdo
      2. 2403768Domain d2ixkb_: 2ixk B: [165740]
        automated match to d1rtva_
        complexed with tdo
  4. 2403775Salmonella typhimurium [TaxId:90371] [51185] (2 PDB entries)
    1. Domains for 1dzr:
      1. 2403778Domain d1dzra_: 1dzr A: [28076]
        complexed with gol, so4
      2. 2403779Domain d1dzrb_: 1dzr B: [28077]
        complexed with gol, so4
    2. Domains for 1dzt:
      1. 2403776Domain d1dzta_: 1dzt A: [28078]
        complexed with aty, gol, so4, tpe
      2. 2403777Domain d1dztb_: 1dzt B: [28079]
        complexed with aty, gol, so4, tpe
  5. 2403780Streptococcus suis [TaxId:1307] [89402] (4 PDB entries)
    1. Domains for 1nxm:
      1. 2403781Domain d1nxma_: 1nxm A: [86385]
      2. 2403782Domain d1nxmb_: 1nxm B: [86386]
    2. Domains for 1nyw:
      1. 2403787Domain d1nywa_: 1nyw A: [86429]
        complexed with dau
      2. 2403788Domain d1nywb_: 1nyw B: [86430]
        complexed with dau
    3. Domains for 1nzc:
      1. 2403789Domain d1nzca_: 1nzc A: [86445]
        complexed with ni, tdx
      2. 2403790Domain d1nzcb_: 1nzc B: [86446]
        complexed with ni, tdx
      3. 2403791Domain d1nzcc_: 1nzc C: [86447]
        complexed with ni, tdx
      4. 2403792Domain d1nzcd_: 1nzc D: [86448]
        complexed with ni, tdx
    4. Domains for 2ixl:
      1. 2403783Domain d2ixla_: 2ixl A: [137772]
        automated match to d1nzca_
        complexed with ni, trh
      2. 2403784Domain d2ixlb_: 2ixl B: [137773]
        automated match to d1nzca_
        complexed with ni, trh
      3. 2403785Domain d2ixlc_: 2ixl C: [137774]
        automated match to d1nzca_
        complexed with ni, trh
      4. 2403786Domain d2ixld_: 2ixl D: [137775]
        automated match to d1nzca_
        complexed with ni, trh
  6. 2403793Sulfolobus tokodaii [TaxId:111955] [141586] (2 PDB entries)
    Uniprot Q96Z62 1-176
    1. Domains for 1wlt:
      1. 2403794Domain d1wlta1: 1wlt A:1-176 [121013]
      2. 2403795Domain d1wltb_: 1wlt B: [121014]
        automated match to d1wlta1
    2. Domains for 2b9u:
      1. 2403796Domain d2b9ua_: 2b9u A: [163018]
        automated match to d1wlta1
      2. 2403797Domain d2b9ub_: 2b9u B: [163019]
        automated match to d1wlta1
      3. 2403798Domain d2b9uc_: 2b9u C: [163020]
        automated match to d1wlta1
      4. 2403799Domain d2b9ud_: 2b9u D: [163021]
        automated match to d1wlta1
      5. 2403800Domain d2b9ue_: 2b9u E: [163022]
        automated match to d1wlta1
      6. 2403801Domain d2b9uf_: 2b9u F: [163023]
        automated match to d1wlta1
      7. 2403802Domain d2b9ug_: 2b9u G: [163024]
        automated match to d1wlta1
      8. 2403803Domain d2b9uh_: 2b9u H: [163025]
        automated match to d1wlta1
      9. 2403804Domain d2b9ui_: 2b9u I: [163026]
        automated match to d1wlta1
      10. 2403805Domain d2b9uj_: 2b9u J: [163027]
        automated match to d1wlta1
      11. 2403806Domain d2b9uk_: 2b9u K: [163028]
        automated match to d1wlta1
      12. 2403807Domain d2b9ul_: 2b9u L: [163029]
        automated match to d1wlta1

More info for Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC from b.82.1.1: dTDP-sugar isomerase

Timeline for Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC from b.82.1.1: dTDP-sugar isomerase: