SCOPe 2.05: Superfamily b.82.1: RmlC-like cupins

Lineage for Superfamily b.82.1: RmlC-like cupins

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.1: RmlC-like cupins [51182] (25 families)

Families:

1. b.82.1.1: dTDP-sugar isomerase [51183] (5 proteins)

2. b.82.1.2: Germin/Seed storage 7S protein [51187] (5 proteins)

3. b.82.1.3: Type I phosphomannose isomerase [51191] (3 proteins)
   Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin

4. b.82.1.4: Homogentisate dioxygenase [51194] (1 protein)
   Share a common two-domain fold with the 7S protein; there is a metal-binding site in the C-terminal domain similar to the metal-binding site of germin
   automatically mapped to Pfam PF04209

5. b.82.1.5: Quercetin 2,3-dioxygenase-like [75035] (3 proteins)
   Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin

6. b.82.1.6: Acireductone dioxygenase [82191] (2 proteins)
   automatically mapped to Pfam PF03079

7. b.82.1.7: Glucose-6-phosphate isomerase, GPI [89403] (2 proteins)
   automatically mapped to Pfam PF06560

8. b.82.1.8: Hypothetical protein TM1112 [89406] (1 protein)

9. b.82.1.9: TM1287-like [89409] (5 proteins)

10. b.82.1.10: TM1459-like [101976] (2 proteins)

11. b.82.1.11: YlbA-like [101979] (4 proteins)
    Pfam PF05899; formerly pfam06038; duplication: consists of two germin-like domains

12. b.82.1.12: Pirin-like [101984] (3 proteins)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin

13. b.82.1.13: KduI-like [110318] (1 protein)
    Pfam PF04962: duplication: consists of two germin-like domains

14. b.82.1.14: Ureidoglycolate hydrolase AllA [117312] (1 protein)
    Pfam PF04115; beta-hairpin-swapped dimeric protein of the germin-like fold

15. b.82.1.15: Probable transcriptional regulator VC1968, C-terminal domain [117315] (1 protein)

16. b.82.1.16: YML079-like [117318] (4 proteins)
    Pfam PF06172; DUF985

17. b.82.1.17: PA5104-like [141609] (2 proteins)
    Pfam PF05962; DUF886; duplication: consists of two germin-like domains; overall structural similarity to the YlbA-like family (101979) except a deletion in the interdomain linker region

18. b.82.1.18: MJ0764-like [141612] (1 protein)
    automatically mapped to Pfam PF04962

19. b.82.1.19: Cysteine dioxygenase type I [141615] (2 proteins)
    Pfam PF05995, CDO_I

20. b.82.1.20: 3-hydroxyanthranilic acid dioxygenase-like [141618] (1 protein)
    Pfam PF06052; 3-HAO

21. b.82.1.21: Acetylacetone-cleaving enzyme-like [159293] (2 proteins)
    PfamB PB026844

22. b.82.1.22: VPA0057-like [159296] (1 protein)
    Pfam PF06865; DUF1255; non-canonical dimerisation mode

23. b.82.1.23: Gentisate 1,2-dioxygenase-like [159299] (2 proteins)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin; homotetramer

24. b.82.1.24: EutQ-like [159304] (1 protein)
    Pfam PF06249

25. b.82.1.0: automated matches [191354] (1 protein)
    not a true family

More info for Superfamily b.82.1: RmlC-like cupins

Timeline for Superfamily b.82.1: RmlC-like cupins:

• Superfamily b.82.1: RmlC-like cupins first appeared (with stable ids) in SCOP 1.55, called Superfamily b.82.1: RmlC-like
  
• Superfamily b.82.1: RmlC-like cupins appears in SCOPe 2.04
  
• Superfamily b.82.1: RmlC-like cupins appears in SCOPe 2.06
  
• Superfamily b.82.1: RmlC-like cupins appears in the current release, SCOPe 2.08