SCOPe 2.05: Protein: Polygalacturonase

Lineage for Protein: Polygalacturonase

Root: SCOPe 2.05
Class b: All beta proteins [48724] (176 folds)
Fold b.80: Single-stranded right-handed beta-helix [51125] (8 superfamilies)
superhelix turns are made of parallel beta-strands and (short) turns
Superfamily b.80.1: Pectin lyase-like [51126] (12 families)
superhelix turns are made of 3 strands each
Family b.80.1.3: Galacturonase [51137] (3 proteins)
this is a repeat family; one repeat unit is 1bhe A:244-269 found in domain
Protein Polygalacturonase [51140] (6 species)

Species:

Erwinia carotovora, subsp. carotovora [TaxId:554] [51141] (1 PDB entry)
- Domain for 1bhe:
  - Domain d1bhea_: 1bhe A: [28030]
    CASP3
Fungus (Aspergillus aculeatus) [TaxId:5053] [63847] (2 PDB entries)
1. Domain for 1ia5:
  - Domain d1ia5a_: 1ia5 A: [62111]
    complexed with man
2. Domains for 1ib4:
  1. Domain d1ib4a_: 1ib4 A: [62143]
    complexed with cd, man
  2. Domain d1ib4b_: 1ib4 B: [62144]
    complexed with cd, man
Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId:5061] [101950] (1 PDB entry)
- Domains for 1nhc:
  1. Domain d1nhca_: 1nhc A: [91879]
    complexed with gol, man, nag, so4
  2. Domain d1nhcb_: 1nhc B: [91880]
    complexed with gol, man, nag, so4
  3. Domain d1nhcc_: 1nhc C: [91881]
    complexed with gol, man, nag, so4
  4. Domain d1nhcd_: 1nhc D: [91882]
    complexed with gol, man, nag, so4
  5. Domain d1nhce_: 1nhc E: [91883]
    complexed with gol, man, nag, so4
  6. Domain d1nhcf_: 1nhc F: [91884]
    complexed with gol, man, nag, so4
Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId:5061] [63382] (1 PDB entry)
- Domains for 1czf:
  1. Domain d1czfa_: 1czf A: [28031]
    complexed with nag, zn
  2. Domain d1czfb_: 1czf B: [28032]
    complexed with nag, zn
Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId:58369] [75025] (3 PDB entries)
1. Domain for 1k5c:
  - Domain d1k5ca_: 1k5c A: [72076]
    complexed with cl, gol, nag
2. Domain for 1kcc:
  - Domain d1kcca_: 1kcc A: [72298]
    complexed with cl, gtr, na, nag
3. Domain for 1kcd:
  - Domain d1kcda_: 1kcd A: [72299]
    complexed with cl, gtk, gtr, nag
Fusarium moniliforme [TaxId:117187] [69332] (1 PDB entry)
- Domain for 1hg8:
  - Domain d1hg8a_: 1hg8 A: [65830]
    complexed with nag

More info for Protein Polygalacturonase from b.80.1.3: Galacturonase

Timeline for Protein Polygalacturonase from b.80.1.3: Galacturonase:

Protein Polygalacturonase from b.80.1.3: Galacturonase first appeared (with stable ids) in SCOP 1.55
Protein Polygalacturonase from b.80.1.3: Galacturonase appears in SCOPe 2.04
Protein Polygalacturonase from b.80.1.3: Galacturonase appears in SCOPe 2.06
Protein Polygalacturonase from b.80.1.3: Galacturonase appears in the current release, SCOPe 2.08