SCOPe 2.05: Protein: Metalloprotease

Lineage for Protein: Metalloprotease

Root: SCOPe 2.05
Class b: All beta proteins [48724] (176 folds)
Fold b.80: Single-stranded right-handed beta-helix [51125] (8 superfamilies)
superhelix turns are made of parallel beta-strands and (short) turns
Superfamily b.80.7: beta-Roll [51120] (2 families)
superhelix turns are made of two short strands each

Family b.80.7.1: Serralysin-like metalloprotease, C-terminal domain [51121] (1 protein)
duplication: halfturs of beta-helix are sequence and structural repeats; binds calcium ions between the turns
this is a repeat family; one repeat unit is 1go7 P:374-356 found in domain

Protein Metalloprotease [51122] (4 species)
The catalytic N-terminal domain belong to the "zincin" superfamily

Species:

Erwinia chrysanthemi [TaxId:556] [82189] (9 PDB entries)
protease C
1. Domain for 1go7:
  - Domain d1go7p1: 1go7 P:259-479 [76245]
    Other proteins in same PDB: d1go7p2
    complexed with ca, po4, zn; mutant
2. Domain for 1go8:
  - Domain d1go8p1: 1go8 P:259-479 [76247]
    Other proteins in same PDB: d1go8p2
    complexed with ca, po4, zn; mutant
3. Domain for 1k7g:
  - Domain d1k7ga1: 1k7g A:259-479 [77279]
    Other proteins in same PDB: d1k7ga2
    complexed with ca, po4, zn
4. Domain for 1k7i:
  - Domain d1k7ia1: 1k7i A:259-479 [77281]
    Other proteins in same PDB: d1k7ia2
    complexed with ca, zn; mutant
5. Domain for 1k7q:
  - Domain d1k7qa1: 1k7q A:259-479 [77283]
    Other proteins in same PDB: d1k7qa2
    complexed with ca, zn; mutant
6. Domain for 3hb2:
  - Domain d3hb2p2: 3hb2 P:259-479 [210959]
    Other proteins in same PDB: d3hb2p1
    automated match to d1af0a1
    complexed with ca, cl, zn; mutant
7. Domain for 3hbu:
  - Domain d3hbup2: 3hbu P:259-479 [210989]
    Other proteins in same PDB: d3hbup1
    automated match to d1af0a1
    complexed with ca, cl, zn; mutant
8. Domain for 3hbv:
  - Domain d3hbvp1: 3hbv P:259-479 [210990]
    Other proteins in same PDB: d3hbvp2
    automated match to d1af0a1
    complexed with ca, cl, zn; mutant
9. Domain for 3hda:
  - Domain d3hdap1: 3hda P:259-479 [211001]
    Other proteins in same PDB: d3hdap2
    automated match to d1af0a1
    complexed with ca, cl; mutant
Pseudomonas aeruginosa [TaxId:287] [51123] (3 PDB entries)
alkaline protease
1. Domain for 1akl:
  - Domain d1akla1: 1akl A:247-470 [28013]
    Other proteins in same PDB: d1akla2
    complexed with ca, zn
2. Domain for 1jiw:
  - Domain d1jiwp1: 1jiw P:247-470 [63079]
    Other proteins in same PDB: d1jiwi_, d1jiwp2
    complexed with ca, zn
3. Domain for 1kap:
  - Domain d1kapp1: 1kap P:247-470 [28012]
    Other proteins in same PDB: d1kapp2
    complexed with ca, zn
Pseudomonas sp., tac ii 18 [TaxId:306] [82190] (8 PDB entries)
psychrophilic alkaline protease
1. Domain for 1g9k:
  - Domain d1g9ka1: 1g9k A:245-463 [76217]
    Other proteins in same PDB: d1g9ka2
    complexed with ca, so4, zn
2. Domain for 1h71:
  - Domain d1h71p1: 1h71 P:245-463 [76704]
    Other proteins in same PDB: d1h71p2
    complexed with ca, zn
3. Domain for 1o0q:
  - Domain d1o0qa1: 1o0q A:245-463 [86536]
    Other proteins in same PDB: d1o0qa2
    complexed with ca, so4
4. Domain for 1o0t:
  - Domain d1o0ta1: 1o0t A:245-463 [86544]
    Other proteins in same PDB: d1o0ta2
    complexed with ca, so4
5. Domain for 1om6:
  - Domain d1om6a1: 1om6 A:245-463 [87071]
    Other proteins in same PDB: d1om6a2
    complexed with ca, so4
6. Domain for 1om7:
  - Domain d1om7a1: 1om7 A:245-463 [87073]
    Other proteins in same PDB: d1om7a2
    complexed with ca, so4
7. Domain for 1om8:
  - Domain d1om8a1: 1om8 A:245-463 [87075]
    Other proteins in same PDB: d1om8a2
    complexed with ca, so4
8. Domain for 1omj:
  - Domain d1omja1: 1omj A:245-463 [87083]
    Other proteins in same PDB: d1omja2
    complexed with ca, so4, zn
Serratia marcescens [TaxId:615] [51124] (4 PDB entries)
serralysin
1. Domain for 1af0:
  - Domain d1af0a1: 1af0 A:247-471 [28017]
    Other proteins in same PDB: d1af0a2
    complexed with 0z9, ca, zn
2. Domain for 1sat:
  - Domain d1sata1: 1sat A:247-471 [28014]
    Other proteins in same PDB: d1sata2
    complexed with ca, zn
3. Domain for 1smp:
  - Domain d1smpa1: 1smp A:247-471 [28016]
    Other proteins in same PDB: d1smpa2, d1smpi_
    complexed with ca, zn
4. Domain for 1srp:
  - Domain d1srpa1: 1srp A:247-471 [28015]
    Other proteins in same PDB: d1srpa2
    complexed with ca, zn

More info for Protein Metalloprotease from b.80.7.1: Serralysin-like metalloprotease, C-terminal domain

Timeline for Protein Metalloprotease from b.80.7.1: Serralysin-like metalloprotease, C-terminal domain:

Protein Metalloprotease from b.80.7.1: Serralysin-like metalloprotease, C-terminal domain first appeared (with stable ids) in SCOP 1.55, called Protein Metalloprotease, C-terminal domain from b.79.1.1: Metalloprotease, C-terminal domain
Protein Metalloprotease from b.80.7.1: Serralysin-like metalloprotease, C-terminal domain appears in SCOPe 2.04
Protein Metalloprotease from b.80.7.1: Serralysin-like metalloprotease, C-terminal domain appears in SCOPe 2.06
Protein Metalloprotease from b.80.7.1: Serralysin-like metalloprotease, C-terminal domain appears in the current release, SCOPe 2.08