SCOPe 2.06: Family b.60.1.1: Retinol binding protein-like

Lineage for Family b.60.1.1: Retinol binding protein-like

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.60: Lipocalins [50813] (1 superfamily)
   barrel, closed or opened; n=8, S=12; meander

4. Superfamily b.60.1: Lipocalins [50814] (10 families)
   bind hydrophobic ligands in their interior

5. Family b.60.1.1: Retinol binding protein-like [50815] (22 proteins)
   barrel, closed; n=8, S=12, meander

Proteins:

1. Alpha-crustacyanin [63807] (1 species)

   • Species European lobster (Homarus gammarus) [TaxId:6707] [63808] (7 PDB entries)

2. Aphrodisin, a sex pheromone [63805] (1 species)

   • Species Golden hamster (Mesocricetus auratus) [TaxId:10036] [63806] (1 PDB entry)

3. beta-Lactoglobulin [50827] (4 species)

   1. Species Cow (Bos taurus) [TaxId:9913] [50828] (56 PDB entries)
      Uniprot P02754

   2. Species Goat (Capra hircus) [TaxId:9925] [267757] (2 PDB entries)

   3. Species Pig (Sus scrofa) [TaxId:9823] [50829] (1 PDB entry)

   4. Species Reindeer (Rangifer tarandus) [TaxId:9870] [141461] (1 PDB entry)
      Uniprot P02755 19-180

4. Bilin-binding protein [50837] (1 species)

   • Species Cabbage butterfly (Pieris brassicae) [TaxId:7116] [50838] (6 PDB entries)

5. Complement protein C8gamma [74998] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [74999] (2 PDB entries)

6. Histamine binding protein [50839] (1 species)

   • Species Brown ear tick (Rhipicephalus appendiculatus) [TaxId:34631] [50840] (2 PDB entries)

7. Hypothetical protein YxeF [159228] (1 species)

   • Species Bacillus subtilis [TaxId:1423] [159229] (1 PDB entry)
     Uniprot P54945 19-144

8. Insecticyanin [141462] (1 species)

   • Species Tobacco hornworm (Manduca sexta) [TaxId:7130] [141463] (1 PDB entry)
     Uniprot P00305 1-189

9. Lipocalin allergen [50824] (2 species)

   1. Species Cow (Bos taurus), bos d 2 [TaxId:9913] [50825] (3 PDB entries)

   2. Species Horse (Equus caballus), equ c 1 [TaxId:9796] [50826] (1 PDB entry)

10. Lipocalin q83 [89364] (2 species)
    activated expression by the myc oncogene

    1. Species Common quail (Coturnix coturnix) [TaxId:9091] [89365] (1 PDB entry)

    2. Species Coturnix japonica [TaxId:93934] [255375] (2 PDB entries)

11. Major urinary protein/alpha-2u-globulin [50832] (2 species)

    1. Species Mouse (Mus musculus) [TaxId:10090] [50833] (19 PDB entries)

    2. Species Norway rat (Rattus norvegicus) [TaxId:10116] [50834] (2 PDB entries)

12. Neutrophil gelatinase-associated lipocalin (NGAL) [50835] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [50836] (39 PDB entries)

13. Nitrophorin 1 [50841] (1 species)

    • Species Rhodnius prolixus [TaxId:13249] [50842] (6 PDB entries)

14. Nitrophorin 2 (prolixin-s) [50843] (1 species)

    • Species Rhodnius prolixus [TaxId:13249] [50844] (14 PDB entries)
      Uniprot Q26241

15. Nitrophorin 4 [50845] (1 species)

    • Species Rhodnius prolixus [TaxId:13249] [50846] (49 PDB entries)
      Uniprot Q94734 22-205

16. Odorant-binding protein [50821] (2 species)
    C-termini swapping dimer

    1. Species Cow (Bos taurus) [TaxId:9913] [50822] (8 PDB entries)

    2. Species Pig (Sus scrofa) [TaxId:9823] [50823] (9 PDB entries)

17. Outer membrane lipoprotein Blc [101861] (1 species)
    bacterial lipocalin

    • Species Escherichia coli [TaxId:562] [101862] (1 PDB entry)

18. Retinoic acid-binding protein [50830] (1 species)

    • Species Norway rat (Rattus norvegicus) [TaxId:10116] [50831] (2 PDB entries)

19. Retinol binding protein [50816] (5 species)

    1. Species Chicken (Gallus gallus) [TaxId:9031] [50820] (1 PDB entry)

    2. Species Chicken (Gallus gallus), plasma isoform [TaxId:9031] [69297] (1 PDB entry)

    3. Species Cow (Bos taurus) [TaxId:9913] [50817] (11 PDB entries)

    4. Species Human (Homo sapiens) [TaxId:9606] [50819] (9 PDB entries)

    5. Species Pig (Sus scrofa) [TaxId:9823] [50818] (1 PDB entry)

20. Salivary lipocalin [74996] (1 species)

    • Species Pig (Sus scrofa) [TaxId:9823] [74997] (1 PDB entry)

21. Von Ebner's gland protein (VEGP, tear lipocalin) [117265] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [117266] (2 PDB entries)
      Uniprot P31025 30-168

22. automated matches [190163] (13 species)
    not a true protein

    1. Species American lobster (Homarus americanus) [TaxId:6706] [194849] (1 PDB entry)

    2. Species Brown ear tick (Rhipicephalus appendiculatus) [TaxId:34631] [189209] (2 PDB entries)

    3. Species Chicken (Gallus gallus) [TaxId:9031] [189846] (1 PDB entry)

    4. Species Cow (Bos taurus) [TaxId:9913] [188392] (1 PDB entry)

    5. Species Escherichia coli [TaxId:562] [187394] (1 PDB entry)

    6. Species Goat (Capra hircus) [TaxId:9925] [257696] (2 PDB entries)

    7. Species Horse (Equus caballus) [TaxId:9796] [189576] (1 PDB entry)

    8. Species Human (Homo sapiens) [TaxId:9606] [188452] (13 PDB entries)

    9. Species Mouse (Mus musculus) [TaxId:10090] [188249] (10 PDB entries)

    10. Species Norway rat (Rattus norvegicus) [TaxId:10116] [237753] (2 PDB entries)

    11. Species Reindeer (Rangifer tarandus) [TaxId:9870] [186888] (1 PDB entry)

    12. Species Rhodnius prolixus [TaxId:13249] [187425] (3 PDB entries)

    13. Species Sheep (Ovis aries) [TaxId:9940] [237679] (4 PDB entries)

More info for Family b.60.1.1: Retinol binding protein-like

Timeline for Family b.60.1.1: Retinol binding protein-like:

• Family b.60.1.1: Retinol binding protein-like first appeared (with stable ids) in SCOP 1.55
  
• Family b.60.1.1: Retinol binding protein-like appears in SCOPe 2.05
  
• Family b.60.1.1: Retinol binding protein-like appears in SCOPe 2.07
  
• Family b.60.1.1: Retinol binding protein-like appears in the current release, SCOPe 2.08