SCOP 1.65: Family b.60.1.1: Retinol binding protein-like

Lineage for Family b.60.1.1: Retinol binding protein-like

1. Root: SCOP 1.65

2. Class b: All beta proteins [48724] (126 folds)

3. Fold b.60: Lipocalins [50813] (1 superfamily)
   barrel, closed or opened; n=8, S=12; meander

4. Superfamily b.60.1: Lipocalins [50814] (3 families)
   bind hydrophobic ligands in their interior

5. Family b.60.1.1: Retinol binding protein-like [50815] (17 proteins)
   barrel, closed; n=8, S=12, meander

Proteins:

1. Alpha-crustacyanin [63807] (1 species)

   • Species European lobster (Homarus gammarus) [TaxId:6707] [63808] (5 PDB entries)

2. Aphrodisin, a sex pheromone [63805] (1 species)

   • Species Golden hamster (Mesocricetus auratus) [TaxId:10036] [63806] (1 PDB entry)

3. beta-Lactoglobulin [50827] (2 species)

   1. Species Cow (Bos taurus) [TaxId:9913] [50828] (15 PDB entries)

   2. Species Pig (Sus scrofa) [TaxId:9823] [50829] (1 PDB entry)

4. Bilin-binding protein [50837] (1 species)

   • Species Cabbage butterfly (Pieris brassicae) [TaxId:7116] [50838] (4 PDB entries)

5. Complement protein C8gamma [74998] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [74999] (2 PDB entries)

6. Histamine binding protein [50839] (1 species)

   • Species Brown ear tick (Rhipicephalus appendiculatus) [TaxId:34631] [50840] (2 PDB entries)

7. Lipocalin allergen [50824] (2 species)

   1. Species Cow (Bos taurus), bos d 2 [TaxId:9913] [50825] (1 PDB entry)

   2. Species Horse (Equus caballus), equ c 1 [TaxId:9796] [50826] (1 PDB entry)

8. Lipocalin q83 [89364] (1 species)
   activated expression by the myc oncogene

   • Species Common quail (Coturnix coturnix) [TaxId:9091] [89365] (1 PDB entry)

9. Major urinary protein/alpha-2u-globulin [50832] (2 species)

   1. Species Mouse (Mus musculus) [TaxId:10090] [50833] (6 PDB entries)

   2. Species Rat (Rattus norvegicus) [TaxId:10116] [50834] (2 PDB entries)

10. Neutrophil gelatinase-associated lipocalin (NGAL) [50835] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [50836] (4 PDB entries)

11. Nitrophorin 1 [50841] (1 species)

    • Species Rhodnius prolixus [TaxId:13249] [50842] (4 PDB entries)

12. Nitrophorin 2 (prolixin-s) [50843] (1 species)

    • Species Rhodnius prolixus [TaxId:13249] [50844] (1 PDB entry)

13. Nitrophorin 4 [50845] (1 species)

    • Species Rhodnius prolixus [TaxId:13249] [50846] (9 PDB entries)

14. Odorant-binding protein [50821] (2 species)
    C-termini swapping dimer

    1. Species Cow (Bos taurus) [TaxId:9913] [50822] (4 PDB entries)

    2. Species Pig (Sus scrofa) [TaxId:9823] [50823] (9 PDB entries)

15. Retinoic acid-binding protein [50830] (1 species)

    • Species Rat (Rattus norvegicus) [TaxId:10116] [50831] (2 PDB entries)

16. Retinol binding protein [50816] (5 species)

    1. Species Chicken (Gallus gallus) [TaxId:9031] [50820] (1 PDB entry)

    2. Species Chicken (Gallus gallus), plasma isoform [TaxId:9031] [69297] (1 PDB entry)

    3. Species Cow (Bos taurus) [TaxId:9913] [50817] (13 PDB entries)

    4. Species Human (Homo sapiens) [TaxId:9606] [50819] (4 PDB entries)

    5. Species Pig (Sus scrofa domestica) [TaxId:9823] [50818] (1 PDB entry)

17. Salivary lipocalin [74996] (1 species)

    • Species Pig (Sus scrofa) [TaxId:9823] [74997] (1 PDB entry)

More info for Family b.60.1.1: Retinol binding protein-like

Timeline for Family b.60.1.1: Retinol binding protein-like:

• Family b.60.1.1: Retinol binding protein-like first appeared (with stable ids) in SCOP 1.55
  
• Family b.60.1.1: Retinol binding protein-like appears in SCOP 1.63
  
• Family b.60.1.1: Retinol binding protein-like appears in SCOP 1.67
  
• Family b.60.1.1: Retinol binding protein-like appears in the current release, SCOPe 2.08