Species:

1. Dengue virus 3 [TaxId:408693] [189803] (2 PDB entries)

   1. Domains for 3u1i:

      1. Domain d3u1ib1: 3u1i B:1-171 [186055] Other proteins in same PDB: d3u1ib2 automated match to d1befa_ complexed with so4

      2. Domain d3u1id_: 3u1i D: [186056] Other proteins in same PDB: d3u1ib2 automated match to d1befa_ complexed with so4

   2. Domain for 3u1j:

      • Domain d3u1jb_: 3u1j B: [186057] Other proteins in same PDB: d3u1je_ automated match to d1befa_

2. Dengue virus type 2 [TaxId:11060] [50602] (1 PDB entry)

   • Domain for 2fom:

     • Domain d2fomb1: 2fom B:18-167 [133884] Other proteins in same PDB: d2foma1, d2foma2, d2foma3 complexed with NS2B peptide cofactor complexed with cl, gol

3. Hepatitis c virus subtype 1a [TaxId:31646] [254867] (2 PDB entries)

   1. Domain for 3m5l:

      • Domain d3m5la1: 3m5l A:986-1179 [232887] Other proteins in same PDB: d3m5la2 automated match to d3sv8a_ complexed with so4, tsv, zn

   2. Domain for 3rc6:

      • Domain d3rc6a1: 3rc6 A:986-1181 [265317] Other proteins in same PDB: d3rc6a2 automated match to d3sv6a_ complexed with zn

4. Human hepatitis C virus (HCV), different isolates [TaxId:11103] [50601] (14 PDB entries) Uniprot P27958 1027-1206,1678-1669 Uniprot P26662 1029-1202,1677-1689 Uniprot O36579 1054-1207

   1. Domains for 1a1q:

      1. Domain d1a1qa_: 1a1q A: [26414] complexed with zn

      2. Domain d1a1qb_: 1a1q B: [26415] complexed with zn

      3. Domain d1a1qc_: 1a1q C: [26416] complexed with zn

   2. Domains for 1a1r:

      1. Domain d1a1r.1: 1a1r A:,C: [26406] complexed with zn

      2. Domain d1a1r.2: 1a1r B:,D: [26407] complexed with zn

   3. Domain for 1bt7:

      • Domain d1bt7a1: 1bt7 A:22-180 [26418] Other proteins in same PDB: d1bt7a2 complexed with zn

   4. Domains for 1cu1:

      1. Domain d1cu1a1: 1cu1 A:705-720,A:3-186 [26408] Other proteins in same PDB: d1cu1a2, d1cu1a3, d1cu1b2, d1cu1b3 complexed with po4, zn

      2. Domain d1cu1b1: 1cu1 B:1705-1720,B:1003-1186 [26409] Other proteins in same PDB: d1cu1a2, d1cu1a3, d1cu1b2, d1cu1b3 complexed with po4, zn

   5. Domains for 1dxp:

      1. Domain d1dxp.1: 1dxp A:,C: [26404] complexed with gol, zn

      2. Domain d1dxp.2: 1dxp B:,D: [26405] complexed with gol, zn

   6. Domain for 1dxw:

      • Domain d1dxwa1: 1dxw A:22-180 [26417] Other proteins in same PDB: d1dxwa2 complexed with 2zf, zn

   7. Domains for 1dy8:

      1. Domain d1dy8.1: 1dy8 A:,C: [26410] complexed with 0f7

      2. Domain d1dy8.2: 1dy8 B:,D: [26411] complexed with 0f7

   8. Domains for 1dy9:

      1. Domain d1dy9.1: 1dy9 A:,C: [26400] complexed with 2zf, zn

      2. Domain d1dy9.2: 1dy9 B:,D: [26401] complexed with 2zf, zn

   9. Domains for 1jxp:

      1. Domain d1jxp.1: 1jxp A:,C: [26402] complexed with zn

      2. Domain d1jxp.2: 1jxp B:,D: [26403] complexed with zn

   10. Domains for 1n1l:

       1. Domain d1n1l.1: 1n1l A:,C: [91544] complexed with trl, zn

       2. Domain d1n1l.2: 1n1l B:,D: [91545] complexed with trl, zn

   11. Domains for 1ns3:

       1. Domain d1ns3.1: 1ns3 A:,C: [26412] complexed with zn

       2. Domain d1ns3.2: 1ns3 B:,D: [26413] complexed with zn

   12. Domains for 1rgq:

       1. Domain d1rgq.1: 1rgq A:,D: [111803] complexed with akp, zn

       2. Domain d1rgq.2: 1rgq B:,C: [111804] complexed with akp, zn

   13. Domains for 1rtl:

       1. Domain d1rtl.1: 1rtl A:,C: [111934] complexed with cpx, zn

       2. Domain d1rtl.2: 1rtl B:,D: [144371] complexed with cpx, zn

   14. Domains for 1w3c:

       1. Domain d1w3c.1: 1w3c A:,C: [114138] complexed with dn1, dn2

       2. Domain d1w3c.2: 1w3c B:,D: [114139] complexed with dn1, dn2

5. West Nile virus [TaxId:11082] [141386] (2 PDB entries) Uniprot P06935 1520-1671

   1. Domain for 2fp7:

      • Domain d2fp7b1: 2fp7 B:19-170 [133899] Other proteins in same PDB: d2fp7a1, d2fp7a2 complexed with NS2B cofactor

   2. Domain for 2ijo:

      • Domain d2ijob1: 2ijo B:5-176 [145527] Other proteins in same PDB: d2ijoa_, d2ijoi_ complexed with NS2B cofactor, chain A

More info for Protein NS3 protease from b.47.1.3: Viral proteases

Timeline for Protein NS3 protease from b.47.1.3: Viral proteases:

• Protein NS3 protease from b.47.1.3: Viral proteases first appeared (with stable ids) in SCOP 1.55
  
• Protein NS3 protease from b.47.1.3: Viral proteases appears in SCOPe 2.05
  
• Protein NS3 protease from b.47.1.3: Viral proteases appears in SCOPe 2.07
  
• Protein NS3 protease from b.47.1.3: Viral proteases appears in the current release, SCOPe 2.08