SCOPe 2.06: Protein: Viral capsid protein

Lineage for Protein: Viral capsid protein

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)
Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
barrel, closed; n=6, S=8; greek-key
duplication: consists of two domains of the same fold
Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families)
Family b.47.1.3: Viral proteases [50596] (5 proteins)
beta sheet in the first domain is opened rather than forms a barrel
Protein Viral capsid protein [50597] (3 species)

Species:

Semliki forest virus [TaxId:11033] [50599] (2 PDB entries)
1. Domains for 1vcp:
  1. Domain d1vcpa_: 1vcp A: [26395]
    complexed with hg
  2. Domain d1vcpb_: 1vcp B: [26396]
    complexed with hg
  3. Domain d1vcpc_: 1vcp C: [26397]
    complexed with hg
2. Domains for 1vcq:
  1. Domain d1vcqa_: 1vcq A: [26398]
  2. Domain d1vcqb_: 1vcq B: [26399]
Sindbis virus [TaxId:11034] [50598] (11 PDB entries)
1. Domain for 1kxa:
  - Domain d1kxaa_: 1kxa A: [26383]
2. Domain for 1kxb:
  - Domain d1kxba_: 1kxb A: [26390]
    mutant
3. Domain for 1kxc:
  - Domain d1kxca_: 1kxc A: [26391]
    mutant
4. Domain for 1kxd:
  - Domain d1kxda_: 1kxd A: [26392]
    mutant
5. Domain for 1kxe:
  - Domain d1kxea_: 1kxe A: [26393]
    mutant
6. Domain for 1kxf:
  - Domain d1kxfa_: 1kxf A: [26380]
7. Domains for 1svp:
  1. Domain d1svpa_: 1svp A: [26384]
  2. Domain d1svpb_: 1svp B: [26385]
8. Domains for 1wyk:
  1. Domain d1wyka_: 1wyk A: [26386]
    complexed with dio, for
  2. Domain d1wykb_: 1wyk B: [26387]
    complexed with dio, for
  3. Domain d1wykc_: 1wyk C: [26388]
    complexed with dio, for
  4. Domain d1wykd_: 1wyk D: [26389]
    complexed with dio, for
9. Domains for 1z8y:
  1. Domain d1z8yq1: 1z8y Q:114-264 [124728]
    automatically matched to d1kxf__
  2. Domain d1z8yr1: 1z8y R:114-264 [124729]
    automatically matched to d1kxf__
  3. Domain d1z8ys1: 1z8y S:114-264 [124730]
    automatically matched to d1kxf__
  4. Domain d1z8yt1: 1z8y T:114-264 [124731]
    automatically matched to d1kxf__
10. Domain for 2snv:
  - Domain d2snva_: 2snv A: [26394]
11. Domains for 2snw:
  1. Domain d2snwa_: 2snw A: [26381]
  2. Domain d2snwb_: 2snw B: [26382]
Venezuelan equine encephalitis virus [TaxId:11036] [89347] (2 PDB entries)
1. Domains for 1ep5:
  1. Domain d1ep5a_: 1ep5 A: [83186]
    complexed with so4, ure
  2. Domain d1ep5b_: 1ep5 B: [83187]
    complexed with so4, ure
  3. Domain d1ep5c_: 1ep5 C: [83188]
    complexed with so4, ure
2. Domains for 1ep6:
  1. Domain d1ep6a_: 1ep6 A: [83189]
  2. Domain d1ep6b_: 1ep6 B: [83190]
  3. Domain d1ep6c_: 1ep6 C: [83191]

More info for Protein Viral capsid protein from b.47.1.3: Viral proteases

Timeline for Protein Viral capsid protein from b.47.1.3: Viral proteases:

Protein Viral capsid protein from b.47.1.3: Viral proteases first appeared (with stable ids) in SCOP 1.55
Protein Viral capsid protein from b.47.1.3: Viral proteases appears in SCOPe 2.05
Protein Viral capsid protein from b.47.1.3: Viral proteases appears in SCOPe 2.07
Protein Viral capsid protein from b.47.1.3: Viral proteases appears in the current release, SCOPe 2.08