Lineage for Family b.42.2.1: Ricin B-like

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 669060Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. 669245Superfamily b.42.2: Ricin B-like lectins [50370] (3 families) (S)
  5. 669246Family b.42.2.1: Ricin B-like [50371] (7 proteins)

Proteins:

  1. 669247Cytolethal distending toxin subunit A [110207] (2 species)
    1. 669248Species Actinobacillus actinomycetemcomitans [TaxId:714] [141329] (1 PDB entry)
    2. 669251Species Haemophilus ducreyi [TaxId:730] [110208] (1 PDB entry)
  2. 669253Cytolethal distending toxin subunit C [110209] (2 species)
    1. 669254Species Actinobacillus actinomycetemcomitans [TaxId:714] [141330] (1 PDB entry)
    2. 669257Species Haemophilus ducreyi [TaxId:730] [110210] (1 PDB entry)
  3. 669259Hemagglutinin component Ha1 [101784] (1 species)
  4. 669265Hemolytic lectin CEL-III, domains 1 and 2 [110211] (1 species)
  5. 669271Plant cytotoxin B-chain (lectin) [50372] (5 species)
    duplication: consists of two domains of this fold
    1. 669272Species Abrus precatorius [TaxId:3816] [50374] (1 PDB entry)
    2. 669275Species Castor bean (Ricinus communis), Ricin [TaxId:3988] [50373] (2 PDB entries)
    3. 669282Species European mistletoe (Viscum album) [TaxId:3972] [50375] (11 PDB entries)
      different sequence variants
    4. 669305Species Mongolian snake-gourd (Trichosanthes kirilowii), Lectin 1 [TaxId:3677] [89337] (1 PDB entry)
    5. 669308Species Sambucus ebulus, ebulin [TaxId:28503] [50376] (4 PDB entries)
  6. 669317Polypeptide N-acetylgalactosaminyltransferase 1, C-terminal domain [117210] (1 species)
  7. 669320Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain) [50377] (2 species)
    1. 669321Species Streptomyces lividans [TaxId:1916] [74958] (3 PDB entries)
    2. 669325Species Streptomyces olivaceoviridis [TaxId:1921] [50378] (11 PDB entries)

More info for Family b.42.2.1: Ricin B-like

Timeline for Family b.42.2.1: Ricin B-like: