Lineage for Family b.42.2.1: Ricin B-like

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2053108Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. 2053527Superfamily b.42.2: Ricin B-like lectins [50370] (4 families) (S)
  5. 2053528Family b.42.2.1: Ricin B-like [50371] (11 protein domains)

Protein Domains:

  1. 205352929-kDa galactose-binding lectin [159148] (1 species)
    duplication: tadem repeat of two Ricin B-like domains
  2. 2053540Agglutinin MOA, N-terminal domain [159152] (1 species)
  3. 2053547Agglutinin-1 chain B [159150] (1 species)
  4. 2053555Cytolethal distending toxin subunit A [110207] (2 species)
    1. 2053556Species Actinobacillus actinomycetemcomitans [TaxId:714] [141329] (1 PDB entry)
      Uniprot O87120 70-222
    2. 2053559Species Haemophilus ducreyi [TaxId:730] [110208] (1 PDB entry)
      Uniprot O06522 57-223
  5. 2053561Cytolethal distending toxin subunit C [110209] (2 species)
    1. 2053562Species Actinobacillus actinomycetemcomitans [TaxId:714] [141330] (1 PDB entry)
      Uniprot Q7DK11 25-178
    2. 2053565Species Haemophilus ducreyi [TaxId:730] [110210] (1 PDB entry)
      Uniprot O06524 25-178
  6. 2053567Hemagglutinin component Ha1 [101784] (2 species)
    1. 2053568Species Clostridium botulinum D phage [TaxId:29342] [101785] (1 PDB entry)
    2. 2053573Species Clostridium botulinum [TaxId:1491] [159147] (3 PDB entries)
  7. 2053586Hemolytic lectin CEL-III, domains 1 and 2 [110211] (1 species)
  8. 2053614Plant cytotoxin B-chain (lectin) [50372] (5 species)
    duplication: consists of two domains of this fold
    1. 2053615Species Abrus precatorius [TaxId:3816] [50374] (1 PDB entry)
    2. 2053618Species Castor bean (Ricinus communis), Ricin [TaxId:3988] [50373] (3 PDB entries)
      Uniprot P06750 303-564
    3. 2053627Species European mistletoe (Viscum album) [TaxId:3972] [50375] (12 PDB entries)
      different sequence variants
      Uniprot Q6ITZ3 266-520; Uniprot P81446 269-531 # 91% sequence identity
    4. 2053652Species Mongolian snake-gourd (Trichosanthes kirilowii), Lectin 1 [TaxId:3677] [89337] (1 PDB entry)
    5. 2053655Species Sambucus ebulus, ebulin [TaxId:28503] [50376] (4 PDB entries)
  9. 2053664Polypeptide N-acetylgalactosaminyltransferase 1, C-terminal domain [117210] (1 species)
  10. 2053667Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain) [50377] (2 species)
    1. 2053668Species Streptomyces lividans [TaxId:1916] [74958] (3 PDB entries)
    2. 2053672Species Streptomyces olivaceoviridis [TaxId:1921] [50378] (11 PDB entries)
  11. 2053695automated matches [190608] (4 species)
    not a true protein
    1. 2053696Species Clostridium botulinum [TaxId:1491] [230685] (7 PDB entries)
    2. 2053721Species Common earthworm (Lumbricus terrestris) [TaxId:6398] [187630] (3 PDB entries)
    3. 2053728Species European mistletoe (Viscum album) [TaxId:3972] [225471] (6 PDB entries)
    4. 2293287Species Marasmius oreades [TaxId:181124] [336588] (1 PDB entry)

More info for Family b.42.2.1: Ricin B-like

Timeline for Family b.42.2.1: Ricin B-like: