Lineage for Family b.40.4.5: Cold shock DNA-binding domain-like

  1. Root: SCOP 1.63
  2. 218896Class b: All beta proteins [48724] (119 folds)
  3. 228551Fold b.40: OB-fold [50198] (9 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 229103Superfamily b.40.4: Nucleic acid-binding proteins [50249] (10 families) (S)
  5. 229270Family b.40.4.5: Cold shock DNA-binding domain-like [50282] (16 proteins)
    barrel, closed; n=5, S=8

Proteins:

  1. 229271Archaeal initiation factor-1a, aIF1a [63772] (1 species)
    evolutionary link between IF1 and eIF1a
  2. 229274C-terminal domain of eIF5a homologue (Hex1) [82105] (1 species)
  3. 229277C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) [50296] (3 species)
    1. 229278Species Archaeon Methanococcus jannaschii [TaxId:2190] [50297] (2 PDB entries)
    2. 229281Species Archaeon Pyrobaculum aerophilum [TaxId:13773] [50298] (1 PDB entry)
    3. 229283Species Archaeon Pyrococcus horikoshii [TaxId:53953] [82104] (1 PDB entry)
  4. 229287Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain [74950] (1 species)
    includes an all-alpha subdomain in the N-terminal extension
  5. 229290Major cold shock protein [50283] (4 species)
    1. 229291Species Bacillus caldolyticus [TaxId:1394] [50286] (6 PDB entries)
    2. 229304Species Bacillus subtilis [TaxId:1423] [50285] (4 PDB entries)
    3. 229309Species Escherichia coli [TaxId:562] [50284] (2 PDB entries)
    4. 229312Species Thermotoga maritima [TaxId:243274] [69262] (1 PDB entry)
  6. 229314N-terminal domain of ribosomal protein L2 [50299] (2 species)
    lacks the last strand
    1. 229315Species Archaeon Haloarcula marismortui [TaxId:2238] [50301] (8 PDB entries)
      includes the N-terminal tail
    2. 229324Species Bacillus stearothermophilus [TaxId:1422] [50300] (1 PDB entry)
  7. 229327Rho termination factor, RNA-binding domain [68910] (1 species)
  8. 229336Ribosomal protein S12 [50302] (1 species)
  9. 229352Ribosomal protein S17 [50304] (2 species)
    1. 229353Species Bacillus stearothermophilus [TaxId:1422] [50306] (1 PDB entry)
    2. 229355Species Thermus thermophilus [TaxId:274] [50305] (14 PDB entries)
  10. 229370RNA polymerase II subunit RBP4 (RpoE) [69268] (1 species)
    includes the N-terminal heterodimerisation alpha+beta subdomain
  11. 229374S1 domain of NusA [69265] (2 species)
    1. 229375Species Mycobacterium tuberculosis [TaxId:1773] [69267] (1 PDB entry)
    2. 229378Species Thermotoga maritima [TaxId:243274] [69266] (1 PDB entry)
  12. 229380S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase [50287] (2 species)
    1. 229381Species Escherichia coli [TaxId:562] [50288] (1 PDB entry)
    2. 229383Species Streptomyces antibioticus [TaxId:1890] [50289] (1 PDB entry)
  13. 229385Translation initiation factor-1a, eIF1a [50292] (1 species)
  14. 229388Translational initiation factor 1, IF1 [50290] (1 species)
  15. 229392Viral structural mimic of eIF2alpha [74952] (2 species)
    1. 229393Species Myxoma virus, m156r [TaxId:10273] [74954] (1 PDB entry)
    2. 229395Species Vaccinia virus [TaxId:10245] [74953] (1 PDB entry)
  16. 229398Y-box protein 1 cold shock domain (YB1-CSD) [69263] (1 species)

More info for Family b.40.4.5: Cold shock DNA-binding domain-like

Timeline for Family b.40.4.5: Cold shock DNA-binding domain-like: