Class b: All beta proteins [48724] (119 folds) |
Fold b.40: OB-fold [50198] (9 superfamilies) barrel, closed or partly opened n=5, S=10 or S=8; greek-key |
Superfamily b.40.4: Nucleic acid-binding proteins [50249] (10 families) |
Family b.40.4.5: Cold shock DNA-binding domain-like [50282] (16 proteins) barrel, closed; n=5, S=8 |
Archaeal initiation factor-1a, aIF1a [63772] (1 species) evolutionary link between IF1 and eIF1a |
Species Archaeon Methanococcus jannaschii [TaxId:2190] [63773] (1 PDB entry) |
C-terminal domain of eIF5a homologue (Hex1) [82105] (1 species) |
Species Filamentous fungi (Neurospora crassa) [TaxId:5141] [82106] (1 PDB entry) |
C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) [50296] (3 species) |
Species Archaeon Methanococcus jannaschii [TaxId:2190] [50297] (2 PDB entries) |
Species Archaeon Pyrobaculum aerophilum [TaxId:13773] [50298] (1 PDB entry) |
Species Archaeon Pyrococcus horikoshii [TaxId:53953] [82104] (1 PDB entry) |
Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain [74950] (1 species) includes an all-alpha subdomain in the N-terminal extension |
Species Human (Homo sapiens) [TaxId:9606] [74951] (1 PDB entry) |
Major cold shock protein [50283] (4 species) |
Species Bacillus caldolyticus [TaxId:1394] [50286] (6 PDB entries) |
Species Bacillus subtilis [TaxId:1423] [50285] (4 PDB entries) |
Species Escherichia coli [TaxId:562] [50284] (2 PDB entries) |
Species Thermotoga maritima [TaxId:243274] [69262] (1 PDB entry) |
N-terminal domain of ribosomal protein L2 [50299] (2 species) lacks the last strand |
Species Archaeon Haloarcula marismortui [TaxId:2238] [50301] (8 PDB entries) includes the N-terminal tail |
Species Bacillus stearothermophilus [TaxId:1422] [50300] (1 PDB entry) |
Rho termination factor, RNA-binding domain [68910] (1 species) |
Species Escherichia coli [TaxId:562] [68911] (4 PDB entries) |
Ribosomal protein S12 [50302] (1 species) |
Species Thermus thermophilus [TaxId:274] [50303] (14 PDB entries) |
Ribosomal protein S17 [50304] (2 species) |
Species Bacillus stearothermophilus [TaxId:1422] [50306] (1 PDB entry) |
Species Thermus thermophilus [TaxId:274] [50305] (14 PDB entries) |
RNA polymerase II subunit RBP4 (RpoE) [69268] (1 species) includes the N-terminal heterodimerisation alpha+beta subdomain |
Species Archaeon Methanococcus jannaschii [TaxId:2190] [69269] (1 PDB entry) |
S1 domain of NusA [69265] (2 species) |
Species Mycobacterium tuberculosis [TaxId:1773] [69267] (1 PDB entry) |
Species Thermotoga maritima [TaxId:243274] [69266] (1 PDB entry) |
S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase [50287] (2 species) |
Species Escherichia coli [TaxId:562] [50288] (1 PDB entry) |
Species Streptomyces antibioticus [TaxId:1890] [50289] (1 PDB entry) |
Translation initiation factor-1a, eIF1a [50292] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [50293] (1 PDB entry) |
Translational initiation factor 1, IF1 [50290] (1 species) |
Species Escherichia coli [TaxId:562] [50291] (2 PDB entries) |
Viral structural mimic of eIF2alpha [74952] (2 species) |
Species Myxoma virus, m156r [TaxId:10273] [74954] (1 PDB entry) |
Species Vaccinia virus [TaxId:10245] [74953] (1 PDB entry) |
Y-box protein 1 cold shock domain (YB1-CSD) [69263] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [69264] (1 PDB entry) |
Timeline for Family b.40.4.5: Cold shock DNA-binding domain-like: