SCOPe 2.02: Protein: Aspartyl-tRNA synthetase (AspRS)

Lineage for Protein: Aspartyl-tRNA synthetase (AspRS)

Root: SCOPe 2.02
Class b: All beta proteins [48724] (174 folds)
Fold b.40: OB-fold [50198] (16 superfamilies)
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families)
Family b.40.4.1: Anticodon-binding domain [50250] (2 proteins)
barrel, closed; n=5, S=10
Protein Aspartyl-tRNA synthetase (AspRS) [50251] (5 species)
this is N-terminal domain in prokaryotic enzymes and the first "visible" domain in eukaryotic enzymes

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [50252] (3 PDB entries)
1. Domains for 1asy:
  1. Domain d1asya1: 1asy A:68-204 [25242]
    Other proteins in same PDB: d1asya2, d1asyb2
    protein/RNA complex
  2. Domain d1asyb1: 1asy B:68-204 [25243]
    Other proteins in same PDB: d1asya2, d1asyb2
    protein/RNA complex
2. Domains for 1asz:
  1. Domain d1asza1: 1asz A:68-204 [25240]
    Other proteins in same PDB: d1asza2, d1aszb2
    protein/RNA complex; complexed with atp
  2. Domain d1aszb1: 1asz B:68-204 [25241]
    Other proteins in same PDB: d1asza2, d1aszb2
    protein/RNA complex; complexed with atp
3. Domain for 1eov:
  - Domain d1eova1: 1eov A:71-204 [25239]
    Other proteins in same PDB: d1eova2
Escherichia coli [TaxId:562] [50254] (3 PDB entries)
1. Domain for 1c0a:
  - Domain d1c0aa1: 1c0a A:1-106 [25246]
    Other proteins in same PDB: d1c0aa2, d1c0aa3
    protein/RNA complex; complexed with amo, amp, so4
2. Domains for 1eqr:
  1. Domain d1eqra1: 1eqr A:1-106 [25247]
    Other proteins in same PDB: d1eqra2, d1eqra3, d1eqrb2, d1eqrb3, d1eqrc2, d1eqrc3
    complexed with mg
  2. Domain d1eqrb1: 1eqr B:1-106 [25248]
    Other proteins in same PDB: d1eqra2, d1eqra3, d1eqrb2, d1eqrb3, d1eqrc2, d1eqrc3
    complexed with mg
  3. Domain d1eqrc1: 1eqr C:1-106 [25249]
    Other proteins in same PDB: d1eqra2, d1eqra3, d1eqrb2, d1eqrb3, d1eqrc2, d1eqrc3
    complexed with mg
3. Domains for 1il2:
  1. Domain d1il2a1: 1il2 A:1-106 [66193]
    Other proteins in same PDB: d1il2a2, d1il2a3, d1il2b2, d1il2b3
    protein/RNA complex; complexed with amo, so4
  2. Domain d1il2b1: 1il2 B:1001-1106 [66196]
    Other proteins in same PDB: d1il2a2, d1il2a3, d1il2b2, d1il2b3
    protein/RNA complex; complexed with amo, so4
Pyrococcus kodakaraensis [TaxId:311400] [50253] (1 PDB entry)
- Domains for 1b8a:
  1. Domain d1b8aa1: 1b8a A:1-103 [25244]
    Other proteins in same PDB: d1b8aa2, d1b8ab2
    complexed with atp, mn
  2. Domain d1b8ab1: 1b8a B:1001-1103 [25245]
    Other proteins in same PDB: d1b8aa2, d1b8ab2
    complexed with atp, mn
Thermus thermophilus, AspRS-1 [TaxId:274] [50255] (3 PDB entries)
1. Domains for 1efw:
  1. Domain d1efwa1: 1efw A:1-104 [25252]
    Other proteins in same PDB: d1efwa2, d1efwa3, d1efwb2, d1efwb3
    protein/RNA complex
  2. Domain d1efwb1: 1efw B:1-104 [25253]
    Other proteins in same PDB: d1efwa2, d1efwa3, d1efwb2, d1efwb3
    protein/RNA complex
2. Domains for 1g51:
  1. Domain d1g51a1: 1g51 A:1-104 [25250]
    Other proteins in same PDB: d1g51a2, d1g51a3, d1g51b2, d1g51b3
    complexed with amo, amp, so4
  2. Domain d1g51b1: 1g51 B:1001-1104 [25251]
    Other proteins in same PDB: d1g51a2, d1g51a3, d1g51b2, d1g51b3
    complexed with amo, amp, so4
3. Domains for 1l0w:
  1. Domain d1l0wa1: 1l0w A:1-104 [73426]
    Other proteins in same PDB: d1l0wa2, d1l0wa3, d1l0wb2, d1l0wb3
  2. Domain d1l0wb1: 1l0w B:1001-1104 [73429]
    Other proteins in same PDB: d1l0wa2, d1l0wa3, d1l0wb2, d1l0wb3
Thermus thermophilus, AspRS-2 [TaxId:274] [89323] (1 PDB entry)
non-discriminating and archaeal-type enzyme
- Domains for 1n9w:
  1. Domain d1n9wa1: 1n9w A:1-93 [85473]
    Other proteins in same PDB: d1n9wa2, d1n9wb2
  2. Domain d1n9wb1: 1n9w B:1-97 [85475]
    Other proteins in same PDB: d1n9wa2, d1n9wb2

More info for Protein Aspartyl-tRNA synthetase (AspRS) from b.40.4.1: Anticodon-binding domain

Timeline for Protein Aspartyl-tRNA synthetase (AspRS) from b.40.4.1: Anticodon-binding domain:

Protein Aspartyl-tRNA synthetase (AspRS) from b.40.4.1: Anticodon-binding domain first appeared (with stable ids) in SCOP 1.55
Protein Aspartyl-tRNA synthetase (AspRS) from b.40.4.1: Anticodon-binding domain appears in SCOPe 2.01
Protein Aspartyl-tRNA synthetase (AspRS) from b.40.4.1: Anticodon-binding domain appears in SCOPe 2.03
Protein Aspartyl-tRNA synthetase (AspRS) from b.40.4.1: Anticodon-binding domain appears in the current release, SCOPe 2.08