SCOPe 2.04: Family b.40.4.1: Anticodon-binding domain

Lineage for Family b.40.4.1: Anticodon-binding domain

1. Root: SCOPe 2.04

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.40: OB-fold [50198] (16 superfamilies)
   barrel, closed or partly opened n=5, S=10 or S=8; greek-key

4. Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families)

5. Family b.40.4.1: Anticodon-binding domain [50250] (2 proteins)
   barrel, closed; n=5, S=10

Proteins:

1. Aspartyl-tRNA synthetase (AspRS) [50251] (5 species)
   this is N-terminal domain in prokaryotic enzymes and the first "visible" domain in eukaryotic enzymes

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [50252] (3 PDB entries)

   2. Species Escherichia coli [TaxId:562] [50254] (3 PDB entries)

   3. Species Pyrococcus kodakaraensis [TaxId:311400] [50253] (1 PDB entry)

   4. Species Thermus thermophilus, AspRS-1 [TaxId:274] [50255] (3 PDB entries)

   5. Species Thermus thermophilus, AspRS-2 [TaxId:274] [89323] (1 PDB entry)
      non-discriminating and archaeal-type enzyme

2. Lysyl-tRNA synthetase (LysRS) [50256] (3 species)

   1. Species Escherichia coli, gene lysS [TaxId:562] [50257] (4 PDB entries)

   2. Species Escherichia coli, gene lysU [TaxId:562] [50258] (5 PDB entries)

   3. Species Geobacillus stearothermophilus [TaxId:1422] [225968] (1 PDB entry)

More info for Family b.40.4.1: Anticodon-binding domain

Timeline for Family b.40.4.1: Anticodon-binding domain:

• Family b.40.4.1: Anticodon-binding domain first appeared (with stable ids) in SCOP 1.55
  
• Family b.40.4.1: Anticodon-binding domain appears in SCOPe 2.03
  
• Family b.40.4.1: Anticodon-binding domain appears in SCOPe 2.05
  
• Family b.40.4.1: Anticodon-binding domain appears in the current release, SCOPe 2.08