Lineage for Superfamily b.40.4: Nucleic acid-binding proteins

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 667292Fold b.40: OB-fold [50198] (12 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 668013Superfamily b.40.4: Nucleic acid-binding proteins [50249] (14 families) (S)

Families:

  1. 668014b.40.4.1: Anticodon-binding domain [50250] (2 proteins)
    barrel, closed; n=5, S=10
  2. 668056b.40.4.2: DNA helicase RuvA subunit, N-terminal domain [50259] (1 protein)
    barrel, closed; n=5, S=10
  3. 668080b.40.4.3: Single strand DNA-binding domain, SSB [50263] (12 proteins)
    barrel, closed; n=5, S=10
  4. 668266b.40.4.4: Myf domain [50277] (6 proteins)
  5. 668307b.40.4.5: Cold shock DNA-binding domain-like [50282] (22 proteins)
    barrel, closed; n=5, S=8
  6. 668608b.40.4.6: DNA ligase/mRNA capping enzyme postcatalytic domain [50307] (5 proteins)
  7. 668635b.40.4.7: Phage ssDNA-binding proteins [50315] (3 proteins)
    barrel, open; n*=5, S*=8; the members' structures vary greater that those from cellular organisms
  8. 668670b.40.4.8: RNA polymerase subunit RBP8 [50321] (1 protein)
    duplication; contains tandem repeat of two incomplete OB-folds; forms a single barrel; n=8, S=10
  9. 668699b.40.4.9: RecG "wedge" domain [69259] (1 protein)
  10. 668703b.40.4.10: Hypothetical protein MTH1 (MT0001), insert domain [74955] (1 protein)
  11. 668708b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain [89332] (1 protein)
  12. 668717b.40.4.12: TRAM domain [101768] (3 proteins)
    Pfam PF01938
  13. 668729b.40.4.13: RecO N-terminal domain-like [117204] (1 protein)
    N-terminal part of Pfam PF02565
  14. 668734b.40.4.14: TIP49 domain [141315] (1 protein)
    N-terminal part of Pfam PF06068; the RuvA-like OB-fold domain in RuvB-like eukaryotic proteins

More info for Superfamily b.40.4: Nucleic acid-binding proteins

Timeline for Superfamily b.40.4: Nucleic acid-binding proteins: