Lineage for Protein: Verotoxin-1/shiga-toxin, B-pentamer

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2787872Fold b.40: OB-fold [50198] (17 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 2788203Superfamily b.40.2: Bacterial enterotoxins [50203] (3 families) (S)
  5. 2788204Family b.40.2.1: Bacterial AB5 toxins, B-subunits [50204] (7 proteins)
  6. 2788585Protein Verotoxin-1/shiga-toxin, B-pentamer [50210] (4 species)
    phage-borne toxin; bacteriophages H30 and H19B

Species:

  1. 2788586Enterobacteria phage [TaxId:10730] [187110] (1 PDB entry)
  2. 2788592Escherichia coli [TaxId:562] [50211] (17 PDB entries)
    1. Domains for 1bos:
      1. 2788673Domain d1bosa_: 1bos A: [25075]
        complexed with bgc, gal, gla
      2. 2788674Domain d1bosb_: 1bos B: [25076]
        complexed with bgc, gal, gla
      3. 2788675Domain d1bosc_: 1bos C: [25077]
        complexed with bgc, gal, gla
      4. 2788676Domain d1bosd_: 1bos D: [25078]
        complexed with bgc, gal, gla
      5. 2788677Domain d1bose_: 1bos E: [25079]
        complexed with bgc, gal, gla
      6. 2788678Domain d1bosf_: 1bos F: [25080]
        complexed with bgc, gal, gla
      7. 2788679Domain d1bosg_: 1bos G: [25081]
        complexed with bgc, gal, gla
      8. 2788680Domain d1bosh_: 1bos H: [25082]
        complexed with bgc, gal, gla
      9. 2788681Domain d1bosi_: 1bos I: [25083]
        complexed with bgc, gal, gla
      10. 2788682Domain d1bosj_: 1bos J: [25084]
        complexed with bgc, gal, gla
      11. 2788683Domain d1bosk_: 1bos K: [25085]
        complexed with bgc, gal, gla
      12. 2788684Domain d1bosl_: 1bos L: [25086]
        complexed with bgc, gal, gla
      13. 2788685Domain d1bosm_: 1bos M: [25087]
        complexed with bgc, gal, gla
      14. 2788686Domain d1bosn_: 1bos N: [25088]
        complexed with bgc, gal, gla
      15. 2788687Domain d1boso_: 1bos O: [25089]
        complexed with bgc, gal, gla
      16. 2788688Domain d1bosp_: 1bos P: [25090]
        complexed with bgc, gal, gla
      17. 2788689Domain d1bosq_: 1bos Q: [25091]
        complexed with bgc, gal, gla
      18. 2788690Domain d1bosr_: 1bos R: [25092]
        complexed with bgc, gal, gla
      19. 2788691Domain d1boss_: 1bos S: [25093]
        complexed with bgc, gal, gla
      20. 2788692Domain d1bost_: 1bos T: [25094]
        complexed with bgc, gal, gla
    2. Domains for 1bov:
      1. 2788638Domain d1bova_: 1bov A: [302241]
        automated match to d1bosa_
        complexed with zn
      2. 2788639Domain d1bovb_: 1bov B: [302242]
        automated match to d1bosa_
        complexed with zn
      3. 2788640Domain d1bovc_: 1bov C: [302243]
        automated match to d1bosa_
        complexed with zn
      4. 2788641Domain d1bovd_: 1bov D: [302244]
        automated match to d1bosa_
        complexed with zn
      5. 2788642Domain d1bove_: 1bov E: [302245]
        automated match to d1bosa_
        complexed with zn
    3. Domains for 1c48:
      1. 2788593Domain d1c48a_: 1c48 A: [25015]
      2. 2788594Domain d1c48b_: 1c48 B: [25016]
      3. 2788595Domain d1c48c_: 1c48 C: [25017]
      4. 2788596Domain d1c48d_: 1c48 D: [25018]
      5. 2788597Domain d1c48e_: 1c48 E: [25019]
    4. Domains for 1c4q:
      1. 2788598Domain d1c4qa_: 1c4q A: [25010]
      2. 2788599Domain d1c4qb_: 1c4q B: [25011]
      3. 2788600Domain d1c4qc_: 1c4q C: [25012]
      4. 2788601Domain d1c4qd_: 1c4q D: [25013]
      5. 2788602Domain d1c4qe_: 1c4q E: [25014]
    5. Domains for 1cqf:
      1. 2788643Domain d1cqfa_: 1cqf A: [25055]
        complex with Gb3 trisaccharide
      2. 2788644Domain d1cqfb_: 1cqf B: [25056]
        complex with Gb3 trisaccharide
      3. 2788645Domain d1cqfc_: 1cqf C: [25057]
        complex with Gb3 trisaccharide
      4. 2788646Domain d1cqfd_: 1cqf D: [25058]
        complex with Gb3 trisaccharide
      5. 2788647Domain d1cqfe_: 1cqf E: [25059]
        complex with Gb3 trisaccharide
    6. Domains for 1czg:
      1. 2788668Domain d1czga_: 1czg A: [25095]
        mutant
      2. 2788669Domain d1czgb_: 1czg B: [25096]
        mutant
      3. 2788670Domain d1czgc_: 1czg C: [25097]
        mutant
      4. 2788671Domain d1czgd_: 1czg D: [25098]
        mutant
      5. 2788672Domain d1czge_: 1czg E: [25099]
        mutant
    7. Domains for 1czw:
      1. 2788658Domain d1czwa_: 1czw A: [25060]
        mutant
      2. 2788659Domain d1czwb_: 1czw B: [25061]
        mutant
      3. 2788660Domain d1czwc_: 1czw C: [25062]
        mutant
      4. 2788661Domain d1czwd_: 1czw D: [25063]
        mutant
      5. 2788662Domain d1czwe_: 1czw E: [25064]
        mutant
      6. 2788663Domain d1czwf_: 1czw F: [25065]
        mutant
      7. 2788664Domain d1czwg_: 1czw G: [25066]
        mutant
      8. 2788665Domain d1czwh_: 1czw H: [25067]
        mutant
      9. 2788666Domain d1czwi_: 1czw I: [25068]
        mutant
      10. 2788667Domain d1czwj_: 1czw J: [25069]
        mutant
    8. Domains for 1d1i:
      1. 2788613Domain d1d1ia_: 1d1i A: [25020]
      2. 2788614Domain d1d1ib_: 1d1i B: [25021]
      3. 2788615Domain d1d1ic_: 1d1i C: [25022]
      4. 2788616Domain d1d1id_: 1d1i D: [25023]
      5. 2788617Domain d1d1ie_: 1d1i E: [25024]
    9. Domains for 1d1k:
      1. 2788633Domain d1d1ka_: 1d1k A: [25030]
      2. 2788634Domain d1d1kb_: 1d1k B: [25031]
      3. 2788635Domain d1d1kc_: 1d1k C: [25032]
      4. 2788636Domain d1d1kd_: 1d1k D: [25033]
      5. 2788637Domain d1d1ke_: 1d1k E: [25034]
    10. Domains for 1qoh:
      1. 2788694Domain d1qoha_: 1qoh A: [25035]
        A mutant shiga-like toxin IIe
        mutant
      2. 2788695Domain d1qohb_: 1qoh B: [25036]
        A mutant shiga-like toxin IIe
        mutant
      3. 2788696Domain d1qohc_: 1qoh C: [25037]
        A mutant shiga-like toxin IIe
        mutant
      4. 2788697Domain d1qohd_: 1qoh D: [25038]
        A mutant shiga-like toxin IIe
        mutant
      5. 2788698Domain d1qohe_: 1qoh E: [25039]
        A mutant shiga-like toxin IIe
        mutant
      6. 2788699Domain d1qohf_: 1qoh F: [25040]
        A mutant shiga-like toxin IIe
        mutant
      7. 2788700Domain d1qohg_: 1qoh G: [25041]
        A mutant shiga-like toxin IIe
        mutant
      8. 2788701Domain d1qohh_: 1qoh H: [25042]
        A mutant shiga-like toxin IIe
        mutant
      9. 2788702Domain d1qohi_: 1qoh I: [25043]
        A mutant shiga-like toxin IIe
        mutant
      10. 2788703Domain d1qohj_: 1qoh J: [25044]
        A mutant shiga-like toxin IIe
        mutant
      11. 2788704Domain d1qohk_: 1qoh K: [25045]
        A mutant shiga-like toxin IIe
        mutant
      12. 2788705Domain d1qohl_: 1qoh L: [25046]
        A mutant shiga-like toxin IIe
        mutant
      13. 2788706Domain d1qohm_: 1qoh M: [25047]
        A mutant shiga-like toxin IIe
        mutant
      14. 2788707Domain d1qohn_: 1qoh N: [25048]
        A mutant shiga-like toxin IIe
        mutant
      15. 2788708Domain d1qoho_: 1qoh O: [25049]
        A mutant shiga-like toxin IIe
        mutant
      16. 2788709Domain d1qohp_: 1qoh P: [25050]
        A mutant shiga-like toxin IIe
        mutant
      17. 2788710Domain d1qohq_: 1qoh Q: [25051]
        A mutant shiga-like toxin IIe
        mutant
      18. 2788711Domain d1qohr_: 1qoh R: [25052]
        A mutant shiga-like toxin IIe
        mutant
      19. 2788712Domain d1qohs_: 1qoh S: [25053]
        A mutant shiga-like toxin IIe
        mutant
      20. 2788713Domain d1qoht_: 1qoh T: [25054]
        A mutant shiga-like toxin IIe
        mutant
    11. Domains for 2bos:
      1. 2788628Domain d2bosa_: 2bos A: [25025]
        complexed with nbu; mutant
      2. 2788629Domain d2bosb_: 2bos B: [25026]
        complexed with nbu; mutant
      3. 2788630Domain d2bosc_: 2bos C: [25027]
        complexed with nbu; mutant
      4. 2788631Domain d2bosd_: 2bos D: [25028]
        complexed with nbu; mutant
      5. 2788632Domain d2bose_: 2bos E: [25029]
        complexed with nbu; mutant
    12. Domains for 2c5c:
      1. 2788648Domain d2c5ca_: 2c5c A: [129902]
        automated match to d1bosa_
        complexed with gla, s10, so4
      2. 2788649Domain d2c5cb_: 2c5c B: [129903]
        automated match to d1bosa_
        complexed with gla, s10, so4
      3. 2788650Domain d2c5cc_: 2c5c C: [129904]
        automated match to d1bosa_
        complexed with gla, s10, so4
      4. 2788651Domain d2c5cd_: 2c5c D: [129905]
        automated match to d1bosa_
        complexed with gla, s10, so4
      5. 2788652Domain d2c5ce_: 2c5c E: [129906]
        automated match to d1bosa_
        complexed with gla, s10, so4
      6. 2788653Domain d2c5cf_: 2c5c F: [129907]
        automated match to d1bosa_
        complexed with gla, s10, so4
      7. 2788654Domain d2c5cg_: 2c5c G: [129908]
        automated match to d1bosa_
        complexed with gla, s10, so4
      8. 2788655Domain d2c5ch_: 2c5c H: [129909]
        automated match to d1bosa_
        complexed with gla, s10, so4
      9. 2788656Domain d2c5ci_: 2c5c I: [129910]
        automated match to d1bosa_
        complexed with gla, s10, so4
      10. 2788657Domain d2c5cj_: 2c5c J: [129911]
        automated match to d1bosa_
        complexed with gla, s10, so4
    13. Domains for 2xsc:
      1. 2788618Domain d2xsca_: 2xsc A: [170347]
        automated match to d1bosa_
        complexed with zn
      2. 2788619Domain d2xscb_: 2xsc B: [170348]
        automated match to d1bosa_
        complexed with zn
      3. 2788620Domain d2xscc_: 2xsc C: [170349]
        automated match to d1bosa_
        complexed with zn
      4. 2788621Domain d2xscd_: 2xsc D: [170350]
        automated match to d1bosa_
        complexed with zn
      5. 2788622Domain d2xsce_: 2xsc E: [170351]
        automated match to d1bosa_
        complexed with zn
    14. Domains for 4m1u:
      1. 2788603Domain d4m1ub_: 4m1u B: [229130]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
      2. 2788604Domain d4m1uc_: 4m1u C: [229134]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
      3. 2788605Domain d4m1ud_: 4m1u D: [229133]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
      4. 2788606Domain d4m1ue_: 4m1u E: [229132]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
      5. 2788607Domain d4m1uf_: 4m1u F: [229131]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
    15. Domain for 4ull:
    16. Domains for 7d6q:
      1. 2788623Domain d7d6qb_: 7d6q B: [403200]
        Other proteins in same PDB: d7d6qa_
        automated match to d1r4pb_
        complexed with 1ps
      2. 2788624Domain d7d6qc_: 7d6q C: [403203]
        Other proteins in same PDB: d7d6qa_
        automated match to d1r4pb_
        complexed with 1ps
      3. 2788625Domain d7d6qd_: 7d6q D: [403205]
        Other proteins in same PDB: d7d6qa_
        automated match to d1r4pb_
        complexed with 1ps
      4. 2788626Domain d7d6qe_: 7d6q E: [403207]
        Other proteins in same PDB: d7d6qa_
        automated match to d1r4pb_
        complexed with 1ps
      5. 2788627Domain d7d6qf_: 7d6q F: [403217]
        Other proteins in same PDB: d7d6qa_
        automated match to d1r4pb_
        complexed with 1ps
    17. Domains for 7d6r:
      1. 2788608Domain d7d6rb_: 7d6r B: [403221]
        Other proteins in same PDB: d7d6ra_
        automated match to d1r4pb_
        complexed with 1ps, nh2
      2. 2788609Domain d7d6rc_: 7d6r C: [403216]
        Other proteins in same PDB: d7d6ra_
        automated match to d1r4pb_
        complexed with 1ps, nh2
      3. 2788610Domain d7d6rd_: 7d6r D: [403210]
        Other proteins in same PDB: d7d6ra_
        automated match to d1r4pb_
        complexed with 1ps, nh2
      4. 2788611Domain d7d6re_: 7d6r E: [403218]
        Other proteins in same PDB: d7d6ra_
        automated match to d1r4pb_
        complexed with 1ps, nh2
      5. 2788612Domain d7d6rf_: 7d6r F: [403224]
        Other proteins in same PDB: d7d6ra_
        automated match to d1r4pb_
        complexed with 1ps, nh2
  3. 2788714Shigella dysenteriae, toxin I [TaxId:622] [50212] (3 PDB entries)
    identical sequence with verotoxin-1 B
    1. Domains for 1dm0:
      1. 2788730Domain d1dm0b_: 1dm0 B: [25106]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      2. 2788731Domain d1dm0c_: 1dm0 C: [25107]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      3. 2788732Domain d1dm0d_: 1dm0 D: [25108]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      4. 2788733Domain d1dm0e_: 1dm0 E: [25109]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      5. 2788734Domain d1dm0f_: 1dm0 F: [25110]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      6. 2788735Domain d1dm0g_: 1dm0 G: [25111]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      7. 2788736Domain d1dm0h_: 1dm0 H: [25112]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      8. 2788737Domain d1dm0i_: 1dm0 I: [25113]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      9. 2788738Domain d1dm0j_: 1dm0 J: [25114]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      10. 2788739Domain d1dm0k_: 1dm0 K: [25115]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
    2. Domains for 1qnu:
      1. 2788715Domain d1qnua_: 1qnu A: [25101]
        complexed with emb, mec
      2. 2788716Domain d1qnub_: 1qnu B: [25102]
        complexed with emb, mec
      3. 2788717Domain d1qnuc_: 1qnu C: [25103]
        complexed with emb, mec
      4. 2788718Domain d1qnud_: 1qnu D: [25104]
        complexed with emb, mec
      5. 2788719Domain d1qnue_: 1qnu E: [25105]
        complexed with emb, mec
    3. Domains for 1r4q:
      1. 2788720Domain d1r4qb_: 1r4q B: [97032]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      2. 2788721Domain d1r4qc_: 1r4q C: [97033]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      3. 2788722Domain d1r4qd_: 1r4q D: [97034]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      4. 2788723Domain d1r4qe_: 1r4q E: [97035]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      5. 2788724Domain d1r4qf_: 1r4q F: [97036]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      6. 2788725Domain d1r4qg_: 1r4q G: [97037]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      7. 2788726Domain d1r4qh_: 1r4q H: [97038]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      8. 2788727Domain d1r4qi_: 1r4q I: [97039]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      9. 2788728Domain d1r4qj_: 1r4q J: [97040]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      10. 2788729Domain d1r4qk_: 1r4q K: [97041]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
  4. 2788740Shigella dysenteriae, toxin II [TaxId:622] [101755] (1 PDB entry)

More info for Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits

Timeline for Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits: