Lineage for Protein: Verotoxin-1/shiga-toxin, B-pentamer

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2049950Fold b.40: OB-fold [50198] (16 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 2050241Superfamily b.40.2: Bacterial enterotoxins [50203] (3 families) (S)
  5. 2050242Family b.40.2.1: Bacterial AB5 toxins, B-subunits [50204] (7 protein domains)
  6. 2050555Protein Verotoxin-1/shiga-toxin, B-pentamer [50210] (4 species)
    phage-borne toxin; bacteriophages H30 and H19B

Species:

  1. 2050556Enterobacteria phage [TaxId:10730] [187110] (1 PDB entry)
  2. 2050562Escherichia coli [TaxId:562] [50211] (15 PDB entries)
    1. Domains for 1bos:
      1. 2050618Domain d1bosa_: 1bos A: [25075]
        complexed with gal
      2. 2050619Domain d1bosb_: 1bos B: [25076]
        complexed with gal
      3. 2050620Domain d1bosc_: 1bos C: [25077]
        complexed with gal
      4. 2050621Domain d1bosd_: 1bos D: [25078]
        complexed with gal
      5. 2050622Domain d1bose_: 1bos E: [25079]
        complexed with gal
      6. 2050623Domain d1bosf_: 1bos F: [25080]
        complexed with gal
      7. 2050624Domain d1bosg_: 1bos G: [25081]
        complexed with gal
      8. 2050625Domain d1bosh_: 1bos H: [25082]
        complexed with gal
      9. 2050626Domain d1bosi_: 1bos I: [25083]
        complexed with gal
      10. 2050627Domain d1bosj_: 1bos J: [25084]
        complexed with gal
      11. 2050628Domain d1bosk_: 1bos K: [25085]
        complexed with gal
      12. 2050629Domain d1bosl_: 1bos L: [25086]
        complexed with gal
      13. 2050630Domain d1bosm_: 1bos M: [25087]
        complexed with gal
      14. 2050631Domain d1bosn_: 1bos N: [25088]
        complexed with gal
      15. 2050632Domain d1boso_: 1bos O: [25089]
        complexed with gal
      16. 2050633Domain d1bosp_: 1bos P: [25090]
        complexed with gal
      17. 2050634Domain d1bosq_: 1bos Q: [25091]
        complexed with gal
      18. 2050635Domain d1bosr_: 1bos R: [25092]
        complexed with gal
      19. 2050636Domain d1boss_: 1bos S: [25093]
        complexed with gal
      20. 2050637Domain d1bost_: 1bos T: [25094]
        complexed with gal
    2. Domains for 1bov:
      1. 2050613Domain d1bova_: 1bov A: [302241]
        automated match to d1bosa_
        complexed with zn
      2. 2050614Domain d1bovb_: 1bov B: [302242]
        automated match to d1bosa_
        complexed with zn
      3. 2050615Domain d1bovc_: 1bov C: [302243]
        automated match to d1bosa_
        complexed with zn
      4. 2050616Domain d1bovd_: 1bov D: [302244]
        automated match to d1bosa_
        complexed with zn
      5. 2050617Domain d1bove_: 1bov E: [302245]
        automated match to d1bosa_
        complexed with zn
    3. Domains for 1c48:
      1. 2050568Domain d1c48a_: 1c48 A: [25015]
      2. 2050569Domain d1c48b_: 1c48 B: [25016]
      3. 2050570Domain d1c48c_: 1c48 C: [25017]
      4. 2050571Domain d1c48d_: 1c48 D: [25018]
      5. 2050572Domain d1c48e_: 1c48 E: [25019]
    4. Domains for 1c4q:
      1. 2050563Domain d1c4qa_: 1c4q A: [25010]
      2. 2050564Domain d1c4qb_: 1c4q B: [25011]
      3. 2050565Domain d1c4qc_: 1c4q C: [25012]
      4. 2050566Domain d1c4qd_: 1c4q D: [25013]
      5. 2050567Domain d1c4qe_: 1c4q E: [25014]
    5. Domains for 1cqf:
      1. 2050598Domain d1cqfa_: 1cqf A: [25055]
        complex with Gb3 trisaccharide
      2. 2050599Domain d1cqfb_: 1cqf B: [25056]
        complex with Gb3 trisaccharide
      3. 2050600Domain d1cqfc_: 1cqf C: [25057]
        complex with Gb3 trisaccharide
      4. 2050601Domain d1cqfd_: 1cqf D: [25058]
        complex with Gb3 trisaccharide
      5. 2050602Domain d1cqfe_: 1cqf E: [25059]
        complex with Gb3 trisaccharide
    6. Domains for 1czg:
      1. 2050638Domain d1czga_: 1czg A: [25095]
        mutant
      2. 2050639Domain d1czgb_: 1czg B: [25096]
        mutant
      3. 2050640Domain d1czgc_: 1czg C: [25097]
        mutant
      4. 2050641Domain d1czgd_: 1czg D: [25098]
        mutant
      5. 2050642Domain d1czge_: 1czg E: [25099]
        mutant
    7. Domains for 1czw:
      1. 2050603Domain d1czwa_: 1czw A: [25060]
        mutant
      2. 2050604Domain d1czwb_: 1czw B: [25061]
        mutant
      3. 2050605Domain d1czwc_: 1czw C: [25062]
        mutant
      4. 2050606Domain d1czwd_: 1czw D: [25063]
        mutant
      5. 2050607Domain d1czwe_: 1czw E: [25064]
        mutant
      6. 2050608Domain d1czwf_: 1czw F: [25065]
        mutant
      7. 2050609Domain d1czwg_: 1czw G: [25066]
        mutant
      8. 2050610Domain d1czwh_: 1czw H: [25067]
        mutant
      9. 2050611Domain d1czwi_: 1czw I: [25068]
        mutant
      10. 2050612Domain d1czwj_: 1czw J: [25069]
        mutant
    8. Domains for 1d1i:
      1. 2050573Domain d1d1ia_: 1d1i A: [25020]
      2. 2050574Domain d1d1ib_: 1d1i B: [25021]
      3. 2050575Domain d1d1ic_: 1d1i C: [25022]
      4. 2050576Domain d1d1id_: 1d1i D: [25023]
      5. 2050577Domain d1d1ie_: 1d1i E: [25024]
    9. Domains for 1d1k:
      1. 2050593Domain d1d1ka_: 1d1k A: [25030]
      2. 2050594Domain d1d1kb_: 1d1k B: [25031]
      3. 2050595Domain d1d1kc_: 1d1k C: [25032]
      4. 2050596Domain d1d1kd_: 1d1k D: [25033]
      5. 2050597Domain d1d1ke_: 1d1k E: [25034]
    10. Domains for 1qoh:
      1. 2050654Domain d1qoha_: 1qoh A: [25035]
        A mutant shiga-like toxin IIe
        mutant
      2. 2050655Domain d1qohb_: 1qoh B: [25036]
        A mutant shiga-like toxin IIe
        mutant
      3. 2050656Domain d1qohc_: 1qoh C: [25037]
        A mutant shiga-like toxin IIe
        mutant
      4. 2050657Domain d1qohd_: 1qoh D: [25038]
        A mutant shiga-like toxin IIe
        mutant
      5. 2050658Domain d1qohe_: 1qoh E: [25039]
        A mutant shiga-like toxin IIe
        mutant
      6. 2050659Domain d1qohf_: 1qoh F: [25040]
        A mutant shiga-like toxin IIe
        mutant
      7. 2050660Domain d1qohg_: 1qoh G: [25041]
        A mutant shiga-like toxin IIe
        mutant
      8. 2050661Domain d1qohh_: 1qoh H: [25042]
        A mutant shiga-like toxin IIe
        mutant
      9. 2050662Domain d1qohi_: 1qoh I: [25043]
        A mutant shiga-like toxin IIe
        mutant
      10. 2050663Domain d1qohj_: 1qoh J: [25044]
        A mutant shiga-like toxin IIe
        mutant
      11. 2050664Domain d1qohk_: 1qoh K: [25045]
        A mutant shiga-like toxin IIe
        mutant
      12. 2050665Domain d1qohl_: 1qoh L: [25046]
        A mutant shiga-like toxin IIe
        mutant
      13. 2050666Domain d1qohm_: 1qoh M: [25047]
        A mutant shiga-like toxin IIe
        mutant
      14. 2050667Domain d1qohn_: 1qoh N: [25048]
        A mutant shiga-like toxin IIe
        mutant
      15. 2050668Domain d1qoho_: 1qoh O: [25049]
        A mutant shiga-like toxin IIe
        mutant
      16. 2050669Domain d1qohp_: 1qoh P: [25050]
        A mutant shiga-like toxin IIe
        mutant
      17. 2050670Domain d1qohq_: 1qoh Q: [25051]
        A mutant shiga-like toxin IIe
        mutant
      18. 2050671Domain d1qohr_: 1qoh R: [25052]
        A mutant shiga-like toxin IIe
        mutant
      19. 2050672Domain d1qohs_: 1qoh S: [25053]
        A mutant shiga-like toxin IIe
        mutant
      20. 2050673Domain d1qoht_: 1qoh T: [25054]
        A mutant shiga-like toxin IIe
        mutant
    11. Domains for 2bos:
      1. 2050583Domain d2bosa_: 2bos A: [25025]
        complexed with nbu; mutant
      2. 2050584Domain d2bosb_: 2bos B: [25026]
        complexed with nbu; mutant
      3. 2050585Domain d2bosc_: 2bos C: [25027]
        complexed with nbu; mutant
      4. 2050586Domain d2bosd_: 2bos D: [25028]
        complexed with nbu; mutant
      5. 2050587Domain d2bose_: 2bos E: [25029]
        complexed with nbu; mutant
    12. Domains for 2c5c:
      1. 2050643Domain d2c5ca_: 2c5c A: [129902]
        automated match to d1bosa_
        complexed with gla, s10, so4
      2. 2050644Domain d2c5cb_: 2c5c B: [129903]
        automated match to d1bosa_
        complexed with gla, s10, so4
      3. 2050645Domain d2c5cc_: 2c5c C: [129904]
        automated match to d1bosa_
        complexed with gla, s10, so4
      4. 2050646Domain d2c5cd_: 2c5c D: [129905]
        automated match to d1bosa_
        complexed with gla, s10, so4
      5. 2050647Domain d2c5ce_: 2c5c E: [129906]
        automated match to d1bosa_
        complexed with gla, s10, so4
      6. 2050648Domain d2c5cf_: 2c5c F: [129907]
        automated match to d1bosa_
        complexed with gla, s10, so4
      7. 2050649Domain d2c5cg_: 2c5c G: [129908]
        automated match to d1bosa_
        complexed with gla, s10, so4
      8. 2050650Domain d2c5ch_: 2c5c H: [129909]
        automated match to d1bosa_
        complexed with gla, s10, so4
      9. 2050651Domain d2c5ci_: 2c5c I: [129910]
        automated match to d1bosa_
        complexed with gla, s10, so4
      10. 2050652Domain d2c5cj_: 2c5c J: [129911]
        automated match to d1bosa_
        complexed with gla, s10, so4
    13. Domains for 2xsc:
      1. 2050588Domain d2xsca_: 2xsc A: [170347]
        automated match to d1bosa_
        complexed with zn
      2. 2050589Domain d2xscb_: 2xsc B: [170348]
        automated match to d1bosa_
        complexed with zn
      3. 2050590Domain d2xscc_: 2xsc C: [170349]
        automated match to d1bosa_
        complexed with zn
      4. 2050591Domain d2xscd_: 2xsc D: [170350]
        automated match to d1bosa_
        complexed with zn
      5. 2050592Domain d2xsce_: 2xsc E: [170351]
        automated match to d1bosa_
        complexed with zn
    14. Domains for 4m1u:
      1. 2050578Domain d4m1ub_: 4m1u B: [229130]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
      2. 2050579Domain d4m1uc_: 4m1u C: [229134]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
      3. 2050580Domain d4m1ud_: 4m1u D: [229133]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
      4. 2050581Domain d4m1ue_: 4m1u E: [229132]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
      5. 2050582Domain d4m1uf_: 4m1u F: [229131]
        Other proteins in same PDB: d4m1ua_
        automated match to d1r4pb_
        complexed with 1ps
    15. Domain for 4ull:
  3. 2050674Shigella dysenteriae, toxin I [TaxId:622] [50212] (3 PDB entries)
    identical sequence with verotoxin-1 B
    1. Domains for 1dm0:
      1. 2050690Domain d1dm0b_: 1dm0 B: [25106]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      2. 2050691Domain d1dm0c_: 1dm0 C: [25107]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      3. 2050692Domain d1dm0d_: 1dm0 D: [25108]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      4. 2050693Domain d1dm0e_: 1dm0 E: [25109]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      5. 2050694Domain d1dm0f_: 1dm0 F: [25110]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      6. 2050695Domain d1dm0g_: 1dm0 G: [25111]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      7. 2050696Domain d1dm0h_: 1dm0 H: [25112]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      8. 2050697Domain d1dm0i_: 1dm0 I: [25113]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      9. 2050698Domain d1dm0j_: 1dm0 J: [25114]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
      10. 2050699Domain d1dm0k_: 1dm0 K: [25115]
        Other proteins in same PDB: d1dm0a_, d1dm0l_
    2. Domains for 1qnu:
      1. 2050675Domain d1qnua_: 1qnu A: [25101]
        complexed with emb, mec
      2. 2050676Domain d1qnub_: 1qnu B: [25102]
        complexed with emb, mec
      3. 2050677Domain d1qnuc_: 1qnu C: [25103]
        complexed with emb, mec
      4. 2050678Domain d1qnud_: 1qnu D: [25104]
        complexed with emb, mec
      5. 2050679Domain d1qnue_: 1qnu E: [25105]
        complexed with emb, mec
    3. Domains for 1r4q:
      1. 2050680Domain d1r4qb_: 1r4q B: [97032]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      2. 2050681Domain d1r4qc_: 1r4q C: [97033]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      3. 2050682Domain d1r4qd_: 1r4q D: [97034]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      4. 2050683Domain d1r4qe_: 1r4q E: [97035]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      5. 2050684Domain d1r4qf_: 1r4q F: [97036]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      6. 2050685Domain d1r4qg_: 1r4q G: [97037]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      7. 2050686Domain d1r4qh_: 1r4q H: [97038]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      8. 2050687Domain d1r4qi_: 1r4q I: [97039]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      9. 2050688Domain d1r4qj_: 1r4q J: [97040]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
      10. 2050689Domain d1r4qk_: 1r4q K: [97041]
        Other proteins in same PDB: d1r4qa_, d1r4ql_
  4. 2050700Shigella dysenteriae, toxin II [TaxId:622] [101755] (1 PDB entry)

More info for Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits

Timeline for Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits: