SCOPe 2.07: Protein: D3 core SNRNP protein

Lineage for Protein: D3 core SNRNP protein

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.38: Sm-like fold [50181] (5 superfamilies)
core: barrel, open; n*=4, S*=8; meander; SH3-like topology
Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families)
Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (11 proteins)
forms homo and heteroheptameric ring structures
Pfam PF01423
Protein D3 core SNRNP protein [50188] (3 species)

Species:

Human (Homo sapiens) [TaxId:9606] [50189] (1 PDB entry)
- Domains for 1d3b:
  1. Domain d1d3ba_: 1d3b A: [24798]
    Other proteins in same PDB: d1d3bb_, d1d3bd_, d1d3bf_, d1d3bh_, d1d3bj_, d1d3bl_
    CASP3
    protein/RNA complex; complexed with cit, gol
  2. Domain d1d3bc_: 1d3b C: [24799]
    Other proteins in same PDB: d1d3bb_, d1d3bd_, d1d3bf_, d1d3bh_, d1d3bj_, d1d3bl_
    CASP3
    protein/RNA complex; complexed with cit, gol
  3. Domain d1d3be_: 1d3b E: [24800]
    Other proteins in same PDB: d1d3bb_, d1d3bd_, d1d3bf_, d1d3bh_, d1d3bj_, d1d3bl_
    CASP3
    protein/RNA complex; complexed with cit, gol
  4. Domain d1d3bg_: 1d3b G: [24801]
    Other proteins in same PDB: d1d3bb_, d1d3bd_, d1d3bf_, d1d3bh_, d1d3bj_, d1d3bl_
    CASP3
    protein/RNA complex; complexed with cit, gol
  5. Domain d1d3bi_: 1d3b I: [24802]
    Other proteins in same PDB: d1d3bb_, d1d3bd_, d1d3bf_, d1d3bh_, d1d3bj_, d1d3bl_
    CASP3
    protein/RNA complex; complexed with cit, gol
  6. Domain d1d3bk_: 1d3b K: [24803]
    Other proteins in same PDB: d1d3bb_, d1d3bd_, d1d3bf_, d1d3bh_, d1d3bj_, d1d3bl_
    CASP3
    protein/RNA complex; complexed with cit, gol
Saccharomyces cerevisiae S288c [TaxId:559292] [346233] (1 PDB entry)
- Domains for 3jcm:
  1. Domain d3jcmj_: 3jcm J: [344838]
    Other proteins in same PDB: d3jcmo_, d3jcmp_, d3jcmq_, d3jcms_, d3jcmt_, d3jcmu_, d3jcmv_, d3jcmw_, d3jcmx_, d3jcmy_, d3jcmz_
    complexed with gtp, m7m
  2. Domain d3jcmr_: 3jcm R: [344842]
    Other proteins in same PDB: d3jcmo_, d3jcmp_, d3jcmq_, d3jcms_, d3jcmt_, d3jcmu_, d3jcmv_, d3jcmw_, d3jcmx_, d3jcmy_, d3jcmz_
    complexed with gtp, m7m

Schizosaccharomyces pombe 972h- [TaxId:284812] [346234] (1 PDB entry)
3jb9 chain D is also D3 subunit; not included because sids are not case sensitive

Domain for 3jb9:

Domain d3jb9z_: 3jb9 Z: [344829]
Other proteins in same PDB: d3jb9a1, d3jb9a2, d3jb9a3, d3jb9a4, d3jb9a5, d3jb9b1, d3jb9b2, d3jb9b3, d3jb9b4, d3jb9b5, d3jb9c_, d3jb9e_, d3jb9f_, d3jb9g_, d3jb9h_, d3jb9i_, d3jb9j_, d3jb9k_, d3jb9l_, d3jb9m_, d3jb9r_, d3jb9s1, d3jb9s2, d3jb9t1, d3jb9t2, d3jb9u1, d3jb9u2, d3jb9u3, d3jb9v1, d3jb9v2, d3jb9w_, d3jb9x1, d3jb9x2, d3jb9x3, d3jb9x4, d3jb9y1, d3jb9y2
protein/RNA complex; complexed with adp, gdp, mg, zn

More info for Protein D3 core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP

Timeline for Protein D3 core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP:

Protein D3 core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP first appeared (with stable ids) in SCOP 1.55
Protein D3 core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP appears in SCOPe 2.06
Protein D3 core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP appears in the current release, SCOPe 2.08