Lineage for Species: Simian immunodeficiency virus [TaxId: 11723]

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2782725Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2784433Superfamily b.34.7: DNA-binding domain of retroviral integrase [50122] (2 families) (S)
  5. 2784434Family b.34.7.1: DNA-binding domain of retroviral integrase [50123] (1 protein)
    Pfam PF00552, Pfam PF18103
  6. 2784435Protein DNA-binding domain of retroviral integrase [50124] (4 species)
  7. 2784466Species Simian immunodeficiency virus [TaxId:11723] [50127] (4 PDB entries)

PDB entries in Species: Simian immunodeficiency virus [TaxId: 11723]:

  1. Domain(s) for 1c6v:
  2. Domain(s) for 6rwm:
    1. 2784467Domain d6rwmd2: 6rwm D:223-272 [380199]
      Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, klq, mg, zn
    2. 2784468Domain d6rwmf1: 6rwm F:223-271 [380224]
      Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, klq, mg, zn
    3. 2784469Domain d6rwml2: 6rwm L:223-272 [380239]
      Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, klq, mg, zn
    4. 2784470Domain d6rwmn1: 6rwm N:223-271 [380190]
      Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, klq, mg, zn
  3. Domain(s) for 6rwn:
    1. 2784475Domain d6rwnd2: 6rwn D:223-272 [380197]
      Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, dlu, mg, zn
    2. 2784476Domain d6rwnf1: 6rwn F:223-271 [380236]
      Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, dlu, mg, zn
    3. 2784477Domain d6rwnl2: 6rwn L:223-272 [380221]
      Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, dlu, mg, zn
    4. 2784478Domain d6rwnn1: 6rwn N:223-271 [380214]
      Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, dlu, mg, zn
  4. Domain(s) for 6rwo:
    1. 2784471Domain d6rwod2: 6rwo D:223-272 [380178]
      Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, klq, mg, zn
    2. 2784472Domain d6rwof1: 6rwo F:223-271 [380164]
      Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, klq, mg, zn
    3. 2784473Domain d6rwol2: 6rwo L:223-272 [380235]
      Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, klq, mg, zn
    4. 2784474Domain d6rwon1: 6rwo N:223-271 [380157]
      Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
      automated match to d1ex4a1
      protein/DNA complex; complexed with cl, klq, mg, zn

More info for Species Simian immunodeficiency virus [TaxId:11723] from b.34.7.1 DNA-binding domain of retroviral integrase

Timeline for Species Simian immunodeficiency virus [TaxId:11723] from b.34.7.1 DNA-binding domain of retroviral integrase: