Lineage for Species: Human immunodeficiency virus type 1 [TaxId: 11676]

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2782725Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2784433Superfamily b.34.7: DNA-binding domain of retroviral integrase [50122] (2 families) (S)
  5. 2784434Family b.34.7.1: DNA-binding domain of retroviral integrase [50123] (1 protein)
    Pfam PF00552, Pfam PF18103
  6. 2784435Protein DNA-binding domain of retroviral integrase [50124] (4 species)
  7. 2784436Species Human immunodeficiency virus type 1 [TaxId:11676] [50125] (8 PDB entries)

PDB entries in Species: Human immunodeficiency virus type 1 [TaxId: 11676]:

  1. Domain(s) for 1ex4:
    1. 2784444Domain d1ex4a1: 1ex4 A:223-270 [24627]
      Other proteins in same PDB: d1ex4a2, d1ex4b2
      complexed with cps
    2. 2784445Domain d1ex4b1: 1ex4 B:223-270 [24628]
      Other proteins in same PDB: d1ex4a2, d1ex4b2
      complexed with cps
  2. Domain(s) for 1ihv:
    1. 2784450Domain d1ihva_: 1ihv A: [24629]
    2. 2784451Domain d1ihvb_: 1ihv B: [24630]
  3. Domain(s) for 1ihw:
    1. 2784448Domain d1ihwa_: 1ihw A: [24631]
    2. 2784449Domain d1ihwb_: 1ihw B: [24632]
  4. Domain(s) for 1qmc:
    1. 2784446Domain d1qmca1: 1qmc A:220-270 [24633]
      Other proteins in same PDB: d1qmca2, d1qmcb2
    2. 2784447Domain d1qmcb1: 1qmc B:220-270 [24634]
      Other proteins in same PDB: d1qmca2, d1qmcb2
  5. Domain(s) for 5tc2:
    1. 2784441Domain d5tc2a_: 5tc2 A: [347601]
      automated match to d1c6vx_
      complexed with gol
    2. 2784442Domain d5tc2b_: 5tc2 B: [347682]
      automated match to d1c6vx_
      complexed with gol
  6. Domain(s) for 6t6e:
  7. Domain(s) for 6t6i:
  8. Domain(s) for 6t6j:
    1. 2784438Domain d6t6ja1: 6t6j A:219-270 [391834]
      Other proteins in same PDB: d6t6ja2, d6t6jb2, d6t6jc2
      automated match to d1c6vx_
      complexed with ni; mutant
    2. 2784439Domain d6t6jb1: 6t6j B:219-270 [391820]
      Other proteins in same PDB: d6t6ja2, d6t6jb2, d6t6jc2
      automated match to d1c6vx_
      complexed with ni; mutant
    3. 2784440Domain d6t6jc1: 6t6j C:219-270 [391837]
      Other proteins in same PDB: d6t6ja2, d6t6jb2, d6t6jc2
      automated match to d1c6vx_
      complexed with ni; mutant

More info for Species Human immunodeficiency virus type 1 [TaxId:11676] from b.34.7.1 DNA-binding domain of retroviral integrase

Timeline for Species Human immunodeficiency virus type 1 [TaxId:11676] from b.34.7.1 DNA-binding domain of retroviral integrase: