SCOPe 2.04: Protein: DNA-binding domain of retroviral integrase

Lineage for Protein: DNA-binding domain of retroviral integrase

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.34: SH3-like barrel [50036] (21 superfamilies)
barrel, partly opened; n*=4, S*=8; meander
the last strand is interrupted by a turn of 3-10 helix
Superfamily b.34.7: DNA-binding domain of retroviral integrase [50122] (2 families)
Family b.34.7.1: DNA-binding domain of retroviral integrase [50123] (1 protein)
Protein DNA-binding domain of retroviral integrase [50124] (3 species)

Species:

Human immunodeficiency virus type 1 [TaxId:11676] [50125] (4 PDB entries)
1. Domains for 1ex4:
  1. Domain d1ex4a1: 1ex4 A:223-270 [24627]
    Other proteins in same PDB: d1ex4a2, d1ex4b2
    complexed with cps
  2. Domain d1ex4b1: 1ex4 B:223-270 [24628]
    Other proteins in same PDB: d1ex4a2, d1ex4b2
    complexed with cps
2. Domains for 1ihv:
  1. Domain d1ihva_: 1ihv A: [24629]
  2. Domain d1ihvb_: 1ihv B: [24630]
3. Domains for 1ihw:
  1. Domain d1ihwa_: 1ihw A: [24631]
  2. Domain d1ihwb_: 1ihw B: [24632]
4. Domains for 1qmc:
  1. Domain d1qmca_: 1qmc A: [24633]
  2. Domain d1qmcb_: 1qmc B: [24634]
Rous sarcoma virus RSV [TaxId:11886] [50126] (2 PDB entries)
1. Domains for 1c0m:
  1. Domain d1c0ma1: 1c0m A:217-269 [24635]
    Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
  2. Domain d1c0mb1: 1c0m B:217-269 [24636]
    Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
  3. Domain d1c0mc1: 1c0m C:217-270 [24637]
    Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
  4. Domain d1c0md1: 1c0m D:217-269 [24638]
    Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
2. Domains for 1c1a:
  1. Domain d1c1aa1: 1c1a A:217-272 [24639]
    Other proteins in same PDB: d1c1aa2, d1c1ab2
  2. Domain d1c1ab1: 1c1a B:217-268 [24640]
    Other proteins in same PDB: d1c1aa2, d1c1ab2
Simian immunodeficiency virus [TaxId:11723] [50127] (1 PDB entry)
- Domain for 1c6v:
  - Domain d1c6vx_: 1c6v X: [24641]
    Other proteins in same PDB: d1c6va_, d1c6vb_, d1c6vc_, d1c6vd_
    mutant

More info for Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase

Timeline for Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase:

Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase first appeared (with stable ids) in SCOP 1.55
Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase appears in SCOPe 2.03
Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase appears in SCOPe 2.05
Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase appears in the current release, SCOPe 2.08