SCOPe 2.07: Family b.29.1.2: Glycosyl hydrolases family 16

Lineage for Family b.29.1.2: Glycosyl hydrolases family 16

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
   sandwich; 12-14 strands in 2 sheets; complex topology

4. Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families)

5. Family b.29.1.2: Glycosyl hydrolases family 16 [49925] (7 proteins)
   Pfam PF00722
   beta-Glucanase-like

Proteins:

1. Bacillus 1-3,1-4-beta-glucanase [49926] (5 species)

   1. Species Bacillus licheniformis [TaxId:1402] [49927] (1 PDB entry)

   2. Species Bacillus macerans [TaxId:44252] [49929] (6 PDB entries)

   3. Species Fibrobacter succinogenes [TaxId:833] [89270] (5 PDB entries)
      a natural circularly permuted protein

   4. Species Paenibacillus macerans [TaxId:44252] [188026] (1 PDB entry)

   5. Species synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins [49928] (3 PDB entries)

2. Beta-1,3-glucanase [310824] (3 species)
   Pfam PF03935

   1. Species Nocardiopsis sp. F96 [TaxId:221582] [311091] (1 PDB entry)

   2. Species Pyrococcus furiosus [TaxId:2261] [311092] (1 PDB entry)

   3. Species Thermotoga maritima MSB8 [TaxId:243274] [311093] (5 PDB entries)

3. beta-Agarase A [101636] (1 species)

   • Species Zobellia galactanivorans [TaxId:63186] [101637] (3 PDB entries)

4. GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain [117134] (1 species)

   • Species Clostridium perfringens [TaxId:1502] [117135] (1 PDB entry)
     Uniprot Q934G8 17-420

5. kappa-Carrageenase, catalytic [49930] (2 species)
   1,3-alpha-1,4-beta-D-galactose-4-sulfate-3,6-anhydro-D-galactose 4 galactohydrolase

   1. Species Pseudoalteromonas carrageenovora [TaxId:227] [49931] (2 PDB entries)

   2. Species Zobellia galactanivorans [TaxId:63186] [340263] (1 PDB entry)

6. Xyloglucan endotransglycosylase [101634] (1 species)

   • Species European aspen (Populus tremula) [TaxId:113636] [101635] (2 PDB entries)

7. automated matches [191047] (8 species)
   not a true protein

   1. Species Bacillus licheniformis [TaxId:1402] [188889] (1 PDB entry)

   2. Species Bacillus subtilis [TaxId:1423] [226170] (1 PDB entry)

   3. Species Cellulosimicrobium cellulans [TaxId:1710] [311271] (1 PDB entry)

   4. Species Clostridium thermocellum [TaxId:203119] [274341] (1 PDB entry)

   5. Species Fibrobacter succinogenes [TaxId:59374] [196037] (2 PDB entries)

   6. Species Fibrobacter succinogenes [TaxId:833] [189311] (1 PDB entry)

   7. Species Uncultured murine [TaxId:314099] [225925] (1 PDB entry)

   8. Species Zobellia galactanivorans [TaxId:63186] [194909] (1 PDB entry)

More info for Family b.29.1.2: Glycosyl hydrolases family 16

Timeline for Family b.29.1.2: Glycosyl hydrolases family 16:

• Family b.29.1.2: Glycosyl hydrolases family 16 first appeared (with stable ids) in SCOP 1.55, called Family b.29.1.2: beta-Glucanase-like
  
• Family b.29.1.2: Glycosyl hydrolases family 16 appears in SCOPe 2.06
  
• Family b.29.1.2: Glycosyl hydrolases family 16 appears in the current release, SCOPe 2.08