Lineage for Protein: Rhinovirus coat proteins

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 304390Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 304471Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (7 families) (S)
  5. 304472Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (9 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 304583Protein Rhinovirus coat proteins [49670] (5 species)

Species:

  1. 304584Human rhinovirus A 16 (HRV-16) [49672] (6 PDB entries)
    1. Domains for 1aym:
      1. 304585Domain d1aym.1: 1aym 4:,2: [83036]
      2. 304586Domain d1aym1_: 1aym 1: [23519]
        complexed with dao, myr, zn; mutant
      3. 304587Domain d1aym3_: 1aym 3: [23521]
    2. Domains for 1ayn:
      1. 304597Domain d1ayn.1: 1ayn 4:,2: [83037]
      2. 304598Domain d1ayn1_: 1ayn 1: [23534]
        complexed with dao, myr, zn; mutant
      3. 304599Domain d1ayn3_: 1ayn 3: [23536]
    3. Domains for 1c8m:
      1. 304600Domain d1c8m.1: 1c8m 4:,2: [83044]
      2. 304601Domain d1c8m1_: 1c8m 1: [23528]
        complexed with w11, zn
      3. 304602Domain d1c8m3_: 1c8m 3: [23530]
    4. Domains for 1qju:
      1. 304588Domain d1qju.1: 1qju 4:,2: [83105]
      2. 304589Domain d1qju1_: 1qju 1: [23522]
        complexed with myr, w01, zn; mutant
      3. 304590Domain d1qju3_: 1qju 3: [23524]
    5. Domains for 1qjx:
      1. 304594Domain d1qjx.1: 1qjx 4:,2: [83106]
      2. 304595Domain d1qjx1_: 1qjx 1: [23531]
        complexed with myr, w02, zn; mutant
      3. 304596Domain d1qjx3_: 1qjx 3: [23533]
    6. Domains for 1qjy:
      1. 304591Domain d1qjy.1: 1qjy 4:,2: [83107]
      2. 304592Domain d1qjy1_: 1qjy 1: [23525]
        complexed with myr, w03, zn; mutant
      3. 304593Domain d1qjy3_: 1qjy 3: [23527]
  2. 304603Human rhinovirus A 1A (HRV-1A) [TaxId:12134] [49673] (4 PDB entries)
    1. Domains for 1r1a:
      1. 304604Domain d1r1a.1: 1r1a 4:,2: [83111]
      2. 304605Domain d1r1a1_: 1r1a 1: [23537]
        complexed with suc
      3. 304606Domain d1r1a3_: 1r1a 3: [23539]
    2. Domains for 2hwd:
      1. 304607Domain d2hwd.1: 2hwd 4:,2: [83133]
      2. 304608Domain d2hwd1_: 2hwd 1: [23540]
        complexed with w91
      3. 304609Domain d2hwd3_: 2hwd 3: [23542]
    3. Domains for 2hwe:
      1. 304610Domain d2hwe.1: 2hwe 4:,2: [83134]
      2. 304611Domain d2hwe1_: 2hwe 1: [23543]
        complexed with w54
      3. 304612Domain d2hwe3_: 2hwe 3: [23545]
    4. Domains for 2hwf:
      1. 304613Domain d2hwf.1: 2hwf 4:,2: [83135]
      2. 304614Domain d2hwf1_: 2hwf 1: [23546]
        complexed with jen
      3. 304615Domain d2hwf3_: 2hwf 3: [23548]
  3. 304616Human rhinovirus A 2 (HRV-2) [TaxId:12130] [49674] (1 PDB entry)
  4. 304620Human rhinovirus B 14 (HRV-14) [TaxId:12131] [49671] (28 PDB entries)
    1. Domains for 1hri:
      1. 304660Domain d1hri.1: 1hri 4:,2: [83062]
      2. 304661Domain d1hri1_: 1hri 1: [23474]
        complexed with s57
      3. 304662Domain d1hri3_: 1hri 3: [23476]
    2. Domains for 1hrv:
      1. 304663Domain d1hrv.1: 1hrv 4:,2: [83063]
      2. 304664Domain d1hrv1_: 1hrv 1: [23477]
        complexed with sdz
      3. 304665Domain d1hrv3_: 1hrv 3: [23479]
    3. Domains for 1k5m:
      1. 304621Domain d1k5m.1: 1k5m D:,B: [83093]
      2. 304622Domain d1k5ma_: 1k5m A: [72078]
        grafted HIV-1 v3 loop in chain B
        complexed with sph
      3. 304623Domain d1k5mc_: 1k5m C: [72080]
    4. Domains for 1r08:
      1. 304666Domain d1r08.1: 1r08 4:,2: [83109]
      2. 304667Domain d1r081_: 1r08 1: [23483]
        complexed with w42
      3. 304668Domain d1r083_: 1r08 3: [23485]
    5. Domains for 1r09:
      1. 304627Domain d1r09.1: 1r09 4:,2: [83110]
      2. 304628Domain d1r091_: 1r09 1: [23441]
        complexed with dms, jen
      3. 304629Domain d1r093_: 1r09 3: [23443]
    6. Domains for 1rmu:
      1. 304669Domain d1rmu.1: 1rmu 4:,2: [83113]
      2. 304670Domain d1rmu1_: 1rmu 1: [23504]
        complexed with trs; mutant
      3. 304671Domain d1rmu3_: 1rmu 3: [23506]
    7. Domains for 1ruc:
      1. 304699Domain d1ruc.1: 1ruc 4:,2: [83114]
      2. 304700Domain d1ruc1_: 1ruc 1: [23513]
        complexed with w35; mutant
      3. 304701Domain d1ruc3_: 1ruc 3: [23515]
    8. Domains for 1rud:
      1. 304630Domain d1rud.1: 1rud 4:,2: [83115]
      2. 304631Domain d1rud1_: 1rud 1: [23444]
        complexed with w84; mutant
      3. 304632Domain d1rud3_: 1rud 3: [23446]
    9. Domains for 1rue:
      1. 304633Domain d1rue.1: 1rue 4:,2: [83116]
      2. 304634Domain d1rue1_: 1rue 1: [23468]
        complexed with w35; mutant
      3. 304635Domain d1rue3_: 1rue 3: [23470]
    10. Domains for 1ruf:
      1. 304636Domain d1ruf.1: 1ruf 4:,2: [83117]
      2. 304637Domain d1ruf1_: 1ruf 1: [23471]
        mutant
      3. 304638Domain d1ruf3_: 1ruf 3: [23473]
    11. Domains for 1rug:
      1. 304672Domain d1rug.1: 1rug 4:,2: [83118]
      2. 304673Domain d1rug1_: 1rug 1: [23495]
        complexed with w35; mutant
      3. 304674Domain d1rug3_: 1rug 3: [23497]
    12. Domains for 1ruh:
      1. 304639Domain d1ruh.1: 1ruh 4:,2: [83119]
      2. 304640Domain d1ruh1_: 1ruh 1: [23459]
        complexed with w84; mutant
      3. 304641Domain d1ruh3_: 1ruh 3: [23461]
    13. Domains for 1rui:
      1. 304642Domain d1rui.1: 1rui 4:,2: [83120]
      2. 304643Domain d1rui1_: 1rui 1: [23462]
        complexed with w84; mutant
      3. 304644Domain d1rui3_: 1rui 3: [23464]
    14. Domains for 1ruj:
      1. 304675Domain d1ruj.1: 1ruj 4:,2: [83121]
      2. 304676Domain d1ruj1_: 1ruj 1: [23498]
        mutant
      3. 304677Domain d1ruj3_: 1ruj 3: [23500]
    15. Domains for 1rvf:
      1. 304702Domain d1rvf.1: 1rvf 4:,2: [83122]
        Other proteins in same PDB: d1rvfh_, d1rvfl_
      2. 304703Domain d1rvf1_: 1rvf 1: [23516]
        Other proteins in same PDB: d1rvfh_, d1rvfl_
      3. 304704Domain d1rvf3_: 1rvf 3: [23518]
        Other proteins in same PDB: d1rvfh_, d1rvfl_
    16. Domains for 1vrh:
      1. 304645Domain d1vrh.1: 1vrh 4:,2: [83130]
      2. 304646Domain d1vrh1_: 1vrh 1: [23465]
        complexed with sd8; mutant
      3. 304647Domain d1vrh3_: 1vrh 3: [23467]
    17. Domains for 2hwb:
      1. 304678Domain d2hwb.1: 2hwb 4:,2: [83131]
      2. 304679Domain d2hwb1_: 2hwb 1: [23507]
        complexed with w91; mutant
      3. 304680Domain d2hwb3_: 2hwb 3: [23509]
    18. Domains for 2hwc:
      1. 304681Domain d2hwc.1: 2hwc 4:,2: [83132]
      2. 304682Domain d2hwc1_: 2hwc 1: [23510]
        complexed with w54; mutant
      3. 304683Domain d2hwc3_: 2hwc 3: [23512]
    19. Domains for 2r04:
      1. 304684Domain d2r04.1: 2r04 4:,2: [83138]
      2. 304685Domain d2r041_: 2r04 1: [23486]
        complexed with w71
      3. 304686Domain d2r043_: 2r04 3: [23488]
    20. Domains for 2r06:
      1. 304687Domain d2r06.1: 2r06 4:,2: [83139]
      2. 304688Domain d2r061_: 2r06 1: [23492]
        complexed with w35
      3. 304689Domain d2r063_: 2r06 3: [23494]
    21. Domains for 2r07:
      1. 304648Domain d2r07.1: 2r07 4:,2: [83140]
      2. 304649Domain d2r071_: 2r07 1: [23447]
        complexed with w33
      3. 304650Domain d2r073_: 2r07 3: [23449]
    22. Domains for 2rm2:
      1. 304651Domain d2rm2.1: 2rm2 4:,2: [83141]
      2. 304652Domain d2rm21_: 2rm2 1: [23450]
        complexed with w43
      3. 304653Domain d2rm23_: 2rm2 3: [23452]
    23. Domains for 2rmu:
      1. 304690Domain d2rmu.1: 2rmu 4:,2: [83142]
      2. 304691Domain d2rmu1_: 2rmu 1: [23501]
        mutant
      3. 304692Domain d2rmu3_: 2rmu 3: [23503]
    24. Domains for 2rr1:
      1. 304654Domain d2rr1.1: 2rr1 4:,2: [83143]
      2. 304655Domain d2rr11_: 2rr1 1: [23453]
        complexed with w8r
      3. 304656Domain d2rr13_: 2rr1 3: [23455]
    25. Domains for 2rs1:
      1. 304657Domain d2rs1.1: 2rs1 4:,2: [83144]
      2. 304658Domain d2rs11_: 2rs1 1: [23456]
        complexed with w84
      3. 304659Domain d2rs13_: 2rs1 3: [23458]
    26. Domains for 2rs3:
      1. 304693Domain d2rs3.1: 2rs3 4:,2: [83145]
      2. 304694Domain d2rs31_: 2rs3 1: [23480]
        complexed with w59
      3. 304695Domain d2rs33_: 2rs3 3: [23482]
    27. Domains for 2rs5:
      1. 304696Domain d2rs5.1: 2rs5 4:,2: [83146]
      2. 304697Domain d2rs51_: 2rs5 1: [23489]
        complexed with w56
      3. 304698Domain d2rs53_: 2rs5 3: [23491]
    28. Domains for 4rhv:
      1. 304624Domain d4rhv.1: 4rhv 4:,2: [83147]
      2. 304625Domain d4rhv1_: 4rhv 1: [23438]
      3. 304626Domain d4rhv3_: 4rhv 3: [23440]
  5. 304705Human rhinovirus B 3 (HRV-3) [49675] (1 PDB entry)

More info for Protein Rhinovirus coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Timeline for Protein Rhinovirus coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4):