Lineage for Protein: Polyomavirus coat proteins

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 304390Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 304867Superfamily b.121.6: Group I dsDNA viruses [88648] (1 family) (S)
  5. 304868Family b.121.6.1: Papovaviridae-like VP [88649] (2 proteins)
  6. 304872Protein Polyomavirus coat proteins [49657] (2 species)

Species:

  1. 304873Murine polyoma virus, strain small-plaque 16 [49658] (5 PDB entries)
    1. Domains for 1cn3:
      1. 304884Domain d1cn3a_: 1cn3 A: [23346]
      2. 304885Domain d1cn3b_: 1cn3 B: [23347]
      3. 304886Domain d1cn3c_: 1cn3 C: [23348]
      4. 304887Domain d1cn3d_: 1cn3 D: [23349]
      5. 304888Domain d1cn3e_: 1cn3 E: [23350]
    2. Domains for 1sid:
      1. 304889Domain d1sida_: 1sid A: [23351]
      2. 304890Domain d1sidb_: 1sid B: [23352]
      3. 304891Domain d1sidc_: 1sid C: [23353]
      4. 304892Domain d1sidd_: 1sid D: [23354]
      5. 304893Domain d1side_: 1sid E: [23355]
      6. 304894Domain d1sidf_: 1sid F: [23356]
        complexed with gal, glc, sia
    3. Domains for 1sie:
      1. 304895Domain d1siea_: 1sie A: [23357]
      2. 304896Domain d1sieb_: 1sie B: [23358]
      3. 304897Domain d1siec_: 1sie C: [23359]
      4. 304898Domain d1sied_: 1sie D: [23360]
      5. 304899Domain d1siee_: 1sie E: [23361]
      6. 304900Domain d1sief_: 1sie F: [23362]
        complexed with gal, nag, sia
    4. Domains for 1vpn:
      1. 304879Domain d1vpna_: 1vpn A: [23341]
      2. 304880Domain d1vpnb_: 1vpn B: [23342]
      3. 304881Domain d1vpnc_: 1vpn C: [23343]
      4. 304882Domain d1vpnd_: 1vpn D: [23344]
      5. 304883Domain d1vpne_: 1vpn E: [23345]
    5. Domains for 1vps:
      1. 304874Domain d1vpsa_: 1vps A: [23336]
      2. 304875Domain d1vpsb_: 1vps B: [23337]
      3. 304876Domain d1vpsc_: 1vps C: [23338]
      4. 304877Domain d1vpsd_: 1vps D: [23339]
      5. 304878Domain d1vpse_: 1vps E: [23340]
        complexed with gal, nag, sia
  2. 304901Simian virus 40, Sv40 [TaxId:10633] [49691] (1 PDB entry)

More info for Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP

Timeline for Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP: