SCOP 1.65: Protein: Polyomavirus coat proteins

Lineage for Protein: Polyomavirus coat proteins

Root: SCOP 1.65
Class b: All beta proteins [48724] (126 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.6: Group I dsDNA viruses [88648] (1 family)
Family b.121.6.1: Papovaviridae-like VP [88649] (2 proteins)
Protein Polyomavirus coat proteins [49657] (2 species)

Species:

Murine polyoma virus, strain small-plaque 16 [49658] (5 PDB entries)
1. Domains for 1cn3:
  1. Domain d1cn3a_: 1cn3 A: [23346]
  2. Domain d1cn3b_: 1cn3 B: [23347]
  3. Domain d1cn3c_: 1cn3 C: [23348]
  4. Domain d1cn3d_: 1cn3 D: [23349]
  5. Domain d1cn3e_: 1cn3 E: [23350]
2. Domains for 1sid:
  1. Domain d1sida_: 1sid A: [23351]
  2. Domain d1sidb_: 1sid B: [23352]
  3. Domain d1sidc_: 1sid C: [23353]
  4. Domain d1sidd_: 1sid D: [23354]
  5. Domain d1side_: 1sid E: [23355]
  6. Domain d1sidf_: 1sid F: [23356]
    complexed with gal, glc, sia
3. Domains for 1sie:
  1. Domain d1siea_: 1sie A: [23357]
  2. Domain d1sieb_: 1sie B: [23358]
  3. Domain d1siec_: 1sie C: [23359]
  4. Domain d1sied_: 1sie D: [23360]
  5. Domain d1siee_: 1sie E: [23361]
  6. Domain d1sief_: 1sie F: [23362]
    complexed with gal, nag, sia
4. Domains for 1vpn:
  1. Domain d1vpna_: 1vpn A: [23341]
  2. Domain d1vpnb_: 1vpn B: [23342]
  3. Domain d1vpnc_: 1vpn C: [23343]
  4. Domain d1vpnd_: 1vpn D: [23344]
  5. Domain d1vpne_: 1vpn E: [23345]
5. Domains for 1vps:
  1. Domain d1vpsa_: 1vps A: [23336]
  2. Domain d1vpsb_: 1vps B: [23337]
  3. Domain d1vpsc_: 1vps C: [23338]
  4. Domain d1vpsd_: 1vps D: [23339]
  5. Domain d1vpse_: 1vps E: [23340]
    complexed with gal, nag, sia
Simian virus 40, Sv40 [TaxId:10633] [49691] (1 PDB entry)
- Domains for 1sva:
  1. Domain d1sva1_: 1sva 1: [23580]
  2. Domain d1sva2_: 1sva 2: [23581]
  3. Domain d1sva3_: 1sva 3: [23582]
  4. Domain d1sva4_: 1sva 4: [23583]
  5. Domain d1sva5_: 1sva 5: [23584]
  6. Domain d1sva6_: 1sva 6: [23585]

More info for Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP

Timeline for Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP:

Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP first appeared (with stable ids) in SCOP 1.55, called Protein Murine polyomavirus coat protein vp1 from b.10.1.4: Animal virus proteins
Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP was called Protein Murine polyomavirus coat protein vp1 from b.10.1.4: Animal virus proteins in SCOP 1.63
Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP appears in SCOP 1.67
Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP appears in the current release, SCOPe 2.08