Lineage for Protein: Polyomavirus coat proteins

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2823225Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2823226Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 2823230Protein Polyomavirus coat proteins [49657] (2 species)

Species:

  1. 2823231Murine polyomavirus, strain small-plaque 16 [TaxId:10634] [49658] (11 PDB entries)
    1. Domains for 1cn3:
      1. 2823272Domain d1cn3a_: 1cn3 A: [23346]
      2. 2823273Domain d1cn3b_: 1cn3 B: [23347]
      3. 2823274Domain d1cn3c_: 1cn3 C: [23348]
      4. 2823275Domain d1cn3d_: 1cn3 D: [23349]
      5. 2823276Domain d1cn3e_: 1cn3 E: [23350]
    2. Domains for 1sid:
      1. 2823277Domain d1sida_: 1sid A: [23351]
        has additional insertions and/or extensions that are not grouped together
      2. 2823278Domain d1sidb_: 1sid B: [23352]
        has additional insertions and/or extensions that are not grouped together
      3. 2823279Domain d1sidc_: 1sid C: [23353]
        has additional insertions and/or extensions that are not grouped together
      4. 2823280Domain d1sidd_: 1sid D: [23354]
        has additional insertions and/or extensions that are not grouped together
      5. 2823281Domain d1side_: 1sid E: [23355]
        has additional insertions and/or extensions that are not grouped together
      6. 2823282Domain d1sidf_: 1sid F: [23356]
        has additional insertions and/or extensions that are not grouped together
    3. Domains for 1sie:
      1. 2823283Domain d1siea_: 1sie A: [23357]
        has additional insertions and/or extensions that are not grouped together
      2. 2823284Domain d1sieb_: 1sie B: [23358]
        has additional insertions and/or extensions that are not grouped together
      3. 2823285Domain d1siec_: 1sie C: [23359]
        has additional insertions and/or extensions that are not grouped together
      4. 2823286Domain d1sied_: 1sie D: [23360]
        has additional insertions and/or extensions that are not grouped together
      5. 2823287Domain d1siee_: 1sie E: [23361]
        has additional insertions and/or extensions that are not grouped together
      6. 2823288Domain d1sief_: 1sie F: [23362]
        has additional insertions and/or extensions that are not grouped together
    4. Domains for 1vpn:
      1. 2823242Domain d1vpna_: 1vpn A: [23341]
      2. 2823243Domain d1vpnb_: 1vpn B: [23342]
      3. 2823244Domain d1vpnc_: 1vpn C: [23343]
      4. 2823245Domain d1vpnd_: 1vpn D: [23344]
      5. 2823246Domain d1vpne_: 1vpn E: [23345]
    5. Domains for 1vps:
      1. 2823262Domain d1vpsa_: 1vps A: [23336]
      2. 2823263Domain d1vpsb_: 1vps B: [23337]
      3. 2823264Domain d1vpsc_: 1vps C: [23338]
      4. 2823265Domain d1vpsd_: 1vps D: [23339]
      5. 2823266Domain d1vpse_: 1vps E: [23340]
    6. Domains for 5cpu:
      1. 2823252Domain d5cpua_: 5cpu A: [278557]
        automated match to d1vpsa_
        complexed with gol
      2. 2823253Domain d5cpub_: 5cpu B: [278559]
        automated match to d1vpsa_
        complexed with gol
      3. 2823254Domain d5cpuc_: 5cpu C: [278558]
        automated match to d1vpsa_
        complexed with gol
      4. 2823255Domain d5cpud_: 5cpu D: [278560]
        automated match to d1vpsa_
        complexed with gol
      5. 2823256Domain d5cpue_: 5cpu E: [278561]
        automated match to d1vpsa_
        complexed with gol
    7. Domains for 5cpw:
      1. 2823237Domain d5cpwa_: 5cpw A: [278563]
        automated match to d1vpsa_
        complexed with gol
      2. 2823238Domain d5cpwb_: 5cpw B: [278568]
        automated match to d1vpsa_
        complexed with gol
      3. 2823239Domain d5cpwc_: 5cpw C: [278570]
        automated match to d1vpsa_
        complexed with gol
      4. 2823240Domain d5cpwd_: 5cpw D: [278569]
        automated match to d1vpsa_
        complexed with gol
      5. 2823241Domain d5cpwe_: 5cpw E: [278573]
        automated match to d1vpsa_
        complexed with gol
    8. Domains for 5cpx:
      1. 2823247Domain d5cpxa_: 5cpx A: [278578]
        automated match to d1vpsa_
        complexed with gol
      2. 2823248Domain d5cpxb_: 5cpx B: [278575]
        automated match to d1vpsa_
        complexed with gol
      3. 2823249Domain d5cpxc_: 5cpx C: [278579]
        automated match to d1vpsa_
        complexed with gol
      4. 2823250Domain d5cpxd_: 5cpx D: [278576]
        automated match to d1vpsa_
        complexed with gol
      5. 2823251Domain d5cpxe_: 5cpx E: [278580]
        automated match to d1vpsa_
        complexed with gol
    9. Domains for 5cpy:
      1. 2823267Domain d5cpya_: 5cpy A: [278562]
        automated match to d1vpsa_
        complexed with gol
      2. 2823268Domain d5cpyb_: 5cpy B: [278564]
        automated match to d1vpsa_
        complexed with gol
      3. 2823269Domain d5cpyc_: 5cpy C: [278566]
        automated match to d1vpsa_
        complexed with gol
      4. 2823270Domain d5cpyd_: 5cpy D: [278567]
        automated match to d1vpsa_
        complexed with gol
      5. 2823271Domain d5cpye_: 5cpy E: [278565]
        automated match to d1vpsa_
        complexed with gol
    10. Domains for 5cpz:
      1. 2823232Domain d5cpza_: 5cpz A: [278553]
        automated match to d1vpsa_
        complexed with gol, so4
      2. 2823233Domain d5cpzb_: 5cpz B: [278555]
        automated match to d1vpsa_
        complexed with gol, so4
      3. 2823234Domain d5cpzc_: 5cpz C: [278552]
        automated match to d1vpsa_
        complexed with gol, so4
      4. 2823235Domain d5cpzd_: 5cpz D: [278556]
        automated match to d1vpsa_
        complexed with gol, so4
      5. 2823236Domain d5cpze_: 5cpz E: [278554]
        automated match to d1vpsa_
        complexed with gol, so4
    11. Domains for 5cq0:
      1. 2823257Domain d5cq0a_: 5cq0 A: [278574]
        automated match to d1vpsa_
        complexed with gol, so4
      2. 2823258Domain d5cq0b_: 5cq0 B: [278577]
        automated match to d1vpsa_
        complexed with gol, so4
      3. 2823259Domain d5cq0c_: 5cq0 C: [278581]
        automated match to d1vpsa_
        complexed with gol, so4
      4. 2823260Domain d5cq0d_: 5cq0 D: [278583]
        automated match to d1vpsa_
        complexed with gol, so4
      5. 2823261Domain d5cq0e_: 5cq0 E: [278582]
        automated match to d1vpsa_
        complexed with gol, so4
  2. 2823289Simian virus 40, Sv40 [TaxId:10633] [49691] (1 PDB entry)
    • Domains for 1sva:
      1. 2823290Domain d1sva1_: 1sva 1: [23580]
        has additional insertions and/or extensions that are not grouped together
      2. 2823291Domain d1sva2_: 1sva 2: [23581]
        has additional insertions and/or extensions that are not grouped together
      3. 2823292Domain d1sva3_: 1sva 3: [23582]
        has additional insertions and/or extensions that are not grouped together
      4. 2823293Domain d1sva4_: 1sva 4: [23583]
        has additional insertions and/or extensions that are not grouped together
      5. 2823294Domain d1sva5_: 1sva 5: [23584]
        has additional insertions and/or extensions that are not grouped together
      6. 2823295Domain d1sva6_: 1sva 6: [23585]
        has additional insertions and/or extensions that are not grouped together

More info for Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP

Timeline for Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP: