Lineage for Protein: Polyomavirus coat proteins

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2076457Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2076458Family b.121.6.1: Papovaviridae-like VP [88649] (3 protein domains)
  6. 2076462Protein Polyomavirus coat proteins [49657] (2 species)

Species:

  1. 2076463Murine polyomavirus, strain small-plaque 16 [TaxId:10634] [49658] (11 PDB entries)
    1. Domains for 1cn3:
      1. 2076504Domain d1cn3a_: 1cn3 A: [23346]
      2. 2076505Domain d1cn3b_: 1cn3 B: [23347]
      3. 2076506Domain d1cn3c_: 1cn3 C: [23348]
      4. 2076507Domain d1cn3d_: 1cn3 D: [23349]
      5. 2076508Domain d1cn3e_: 1cn3 E: [23350]
    2. Domains for 1sid:
      1. 2076509Domain d1sida_: 1sid A: [23351]
      2. 2076510Domain d1sidb_: 1sid B: [23352]
      3. 2076511Domain d1sidc_: 1sid C: [23353]
      4. 2076512Domain d1sidd_: 1sid D: [23354]
      5. 2076513Domain d1side_: 1sid E: [23355]
      6. 2076514Domain d1sidf_: 1sid F: [23356]
    3. Domains for 1sie:
      1. 2076515Domain d1siea_: 1sie A: [23357]
      2. 2076516Domain d1sieb_: 1sie B: [23358]
      3. 2076517Domain d1siec_: 1sie C: [23359]
      4. 2076518Domain d1sied_: 1sie D: [23360]
      5. 2076519Domain d1siee_: 1sie E: [23361]
      6. 2076520Domain d1sief_: 1sie F: [23362]
    4. Domains for 1vpn:
      1. 2076469Domain d1vpna_: 1vpn A: [23341]
      2. 2076470Domain d1vpnb_: 1vpn B: [23342]
      3. 2076471Domain d1vpnc_: 1vpn C: [23343]
      4. 2076472Domain d1vpnd_: 1vpn D: [23344]
      5. 2076473Domain d1vpne_: 1vpn E: [23345]
    5. Domains for 1vps:
      1. 2076464Domain d1vpsa_: 1vps A: [23336]
      2. 2076465Domain d1vpsb_: 1vps B: [23337]
      3. 2076466Domain d1vpsc_: 1vps C: [23338]
      4. 2076467Domain d1vpsd_: 1vps D: [23339]
      5. 2076468Domain d1vpse_: 1vps E: [23340]
    6. Domains for 5cpu:
      1. 2076474Domain d5cpua_: 5cpu A: [278557]
        automated match to d1vpsa_
        complexed with gol
      2. 2076475Domain d5cpub_: 5cpu B: [278559]
        automated match to d1vpsa_
        complexed with gol
      3. 2076476Domain d5cpuc_: 5cpu C: [278558]
        automated match to d1vpsa_
        complexed with gol
      4. 2076477Domain d5cpud_: 5cpu D: [278560]
        automated match to d1vpsa_
        complexed with gol
      5. 2076478Domain d5cpue_: 5cpu E: [278561]
        automated match to d1vpsa_
        complexed with gol
    7. Domains for 5cpw:
      1. 2076484Domain d5cpwa_: 5cpw A: [278563]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
      2. 2076485Domain d5cpwb_: 5cpw B: [278568]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
      3. 2076486Domain d5cpwc_: 5cpw C: [278570]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
      4. 2076487Domain d5cpwd_: 5cpw D: [278569]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
      5. 2076488Domain d5cpwe_: 5cpw E: [278573]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
    8. Domains for 5cpx:
      1. 2076489Domain d5cpxa_: 5cpx A: [278578]
        automated match to d1vpsa_
        complexed with gal, gol, nag, sia
      2. 2076490Domain d5cpxb_: 5cpx B: [278575]
        automated match to d1vpsa_
        complexed with gal, gol, nag, sia
      3. 2076491Domain d5cpxc_: 5cpx C: [278579]
        automated match to d1vpsa_
        complexed with gal, gol, nag, sia
      4. 2076492Domain d5cpxd_: 5cpx D: [278576]
        automated match to d1vpsa_
        complexed with gal, gol, nag, sia
      5. 2076493Domain d5cpxe_: 5cpx E: [278580]
        automated match to d1vpsa_
        complexed with gal, gol, nag, sia
    9. Domains for 5cpy:
      1. 2076499Domain d5cpya_: 5cpy A: [278562]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
      2. 2076500Domain d5cpyb_: 5cpy B: [278564]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
      3. 2076501Domain d5cpyc_: 5cpy C: [278566]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
      4. 2076502Domain d5cpyd_: 5cpy D: [278567]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
      5. 2076503Domain d5cpye_: 5cpy E: [278565]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia
    10. Domains for 5cpz:
      1. 2076479Domain d5cpza_: 5cpz A: [278553]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
      2. 2076480Domain d5cpzb_: 5cpz B: [278555]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
      3. 2076481Domain d5cpzc_: 5cpz C: [278552]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
      4. 2076482Domain d5cpzd_: 5cpz D: [278556]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
      5. 2076483Domain d5cpze_: 5cpz E: [278554]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
    11. Domains for 5cq0:
      1. 2076494Domain d5cq0a_: 5cq0 A: [278574]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
      2. 2076495Domain d5cq0b_: 5cq0 B: [278577]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
      3. 2076496Domain d5cq0c_: 5cq0 C: [278581]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
      4. 2076497Domain d5cq0d_: 5cq0 D: [278583]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
      5. 2076498Domain d5cq0e_: 5cq0 E: [278582]
        automated match to d1vpsa_
        complexed with gal, gol, nga, sia, so4
  2. 2076521Simian virus 40, Sv40 [TaxId:10633] [49691] (1 PDB entry)

More info for Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP

Timeline for Protein Polyomavirus coat proteins from b.121.6.1: Papovaviridae-like VP: