SCOPe 2.06: Protein: Comovirus coat proteins (VP37 and VP23)

Lineage for Protein: Comovirus coat proteins (VP37 and VP23)

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)
Family b.121.4.2: Comoviridae-like VP [88636] (3 proteins)
duplication: mature coat protein consists of three similar domains that can be in a single chain or in two separate chains
Protein Comovirus coat proteins (VP37 and VP23) [49627] (2 species)
chain 1 is one-domain VP23; chain 2 is two-domain VP37

Species:

BPMV (Bean pod mottle virus) [TaxId:12260] [49628] (3 PDB entries)
1. Domains for 1bmv:
  1. Domain d1bmv11: 1bmv 1:1001-1185 [83041]
    protein/RNA complex
  2. Domain d1bmv21: 1bmv 2:3001-3182 [83042]
    protein/RNA complex
  3. Domain d1bmv22: 1bmv 2:2001-2189 [83043]
    protein/RNA complex
2. Domains for 1pgl:
  1. Domain d1pgl11: 1pgl 1:1-185 [94690]
    protein/RNA complex
  2. Domain d1pgl21: 1pgl 2:1-182 [94691]
    protein/RNA complex
  3. Domain d1pgl22: 1pgl 2:183-370 [94692]
    protein/RNA complex
3. Domains for 1pgw:
  1. Domain d1pgw11: 1pgw 1:1-185 [94693]
  2. Domain d1pgw21: 1pgw 2:20-182 [94694]
  3. Domain d1pgw22: 1pgw 2:183-370 [94695]
CPMV (Cowpea mosaic virus) [TaxId:12264] [89227] (2 PDB entries)
1. Domains for 1ny7:
  1. Domain d1ny711: 1ny7 1:1-189 [86398]
  2. Domain d1ny721: 1ny7 2:1-182 [86399]
  3. Domain d1ny722: 1ny7 2:183-369 [86400]
2. Domains for 2bfu:
  1. Domain d2bful1: 2bfu L:1-182 [128453]
    automatically matched to d1ny721
  2. Domain d2bful2: 2bfu L:183-369 [128454]
    automatically matched to d1ny722
  3. Domain d2bfus1: 2bfu S:1-189 [128455]
    automatically matched to d1ny711

More info for Protein Comovirus coat proteins (VP37 and VP23) from b.121.4.2: Comoviridae-like VP

Timeline for Protein Comovirus coat proteins (VP37 and VP23) from b.121.4.2: Comoviridae-like VP:

Protein Comovirus coat proteins (VP37 and VP23) from b.121.4.2: Comoviridae-like VP first appeared (with stable ids) in SCOP 1.55, called Protein BPMV coat protein from b.10.1.2: Plant virus proteins
Protein Comovirus coat proteins (VP37 and VP23) from b.121.4.2: Comoviridae-like VP appears in SCOPe 2.05
Protein Comovirus coat proteins (VP37 and VP23) from b.121.4.2: Comoviridae-like VP appears in SCOPe 2.07
Protein Comovirus coat proteins (VP37 and VP23) from b.121.4.2: Comoviridae-like VP appears in the current release, SCOPe 2.08