Lineage for Protein: Comovirus coat proteins (VP37 and VP23)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2409884Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2410108Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2410482Family b.121.4.2: Comoviridae-like VP [88636] (3 protein domains)
    duplication: mature coat protein consists of three similar domains that can be in a single chain or in two separate chains
  6. 2410483Protein Comovirus coat proteins (VP37 and VP23) [49627] (2 species)
    chain 1 is one-domain VP23; chain 2 is two-domain VP37

Species:

  1. 2410484BPMV (Bean pod mottle virus) [TaxId:12260] [49628] (3 PDB entries)
    1. Domains for 1bmv:
      1. 2410491Domain d1bmv11: 1bmv 1:1001-1185 [83041]
        protein/RNA complex
      2. 2410492Domain d1bmv21: 1bmv 2:3001-3182 [83042]
        protein/RNA complex
      3. 2410493Domain d1bmv22: 1bmv 2:2001-2189 [83043]
        protein/RNA complex
    2. Domains for 1pgl:
      1. 2410485Domain d1pgl11: 1pgl 1:1-185 [94690]
        protein/RNA complex
      2. 2410486Domain d1pgl21: 1pgl 2:1-182 [94691]
        protein/RNA complex
      3. 2410487Domain d1pgl22: 1pgl 2:183-370 [94692]
        protein/RNA complex
    3. Domains for 1pgw:
      1. 2410488Domain d1pgw11: 1pgw 1:1-185 [94693]
      2. 2410489Domain d1pgw21: 1pgw 2:20-182 [94694]
      3. 2410490Domain d1pgw22: 1pgw 2:183-370 [94695]
  2. 2410494CPMV (Cowpea mosaic virus) [TaxId:12264] [89227] (2 PDB entries)
    1. Domains for 1ny7:
      1. 2410495Domain d1ny711: 1ny7 1:1-189 [86398]
      2. 2410496Domain d1ny721: 1ny7 2:1-182 [86399]
      3. 2410497Domain d1ny722: 1ny7 2:183-369 [86400]
    2. Domains for 2bfu:
      1. 2410498Domain d2bful1: 2bfu L:1-182 [128453]
        automatically matched to d1ny721
      2. 2410499Domain d2bful2: 2bfu L:183-369 [128454]
        automatically matched to d1ny722
      3. 2410500Domain d2bfus1: 2bfu S:1-189 [128455]
        automatically matched to d1ny711

More info for Protein Comovirus coat proteins (VP37 and VP23) from b.121.4.2: Comoviridae-like VP

Timeline for Protein Comovirus coat proteins (VP37 and VP23) from b.121.4.2: Comoviridae-like VP: