SCOPe 2.08: Protein: STNV coat protein

Lineage for Protein: STNV coat protein

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.7: Satellite viruses [88650] (1 family)
Family b.121.7.1: Satellite viruses [88651] (3 proteins)
Protein STNV coat protein [49621] (1 species)

Species:

Satellite tobacco necrosis virus [TaxId:12881] [49622] (8 PDB entries)
1. Domain for 1a34:
  - Domain d1a34a_: 1a34 A: [23286]
    protein/RNA complex; complexed with so4, u
2. Domains for 1vtz:
  1. Domain d1vtz0_: 1vtz 0: [197589]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  2. Domain d1vtz1_: 1vtz 1: [197590]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  3. Domain d1vtz2_: 1vtz 2: [197591]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  4. Domain d1vtz3_: 1vtz 3: [197592]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  5. Domain d1vtz4_: 1vtz 4: [197593]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  6. Domain d1vtz6_: 1vtz 6: [197594]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  7. Domain d1vtze_: 1vtz e: [197595]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  8. Domain d1vtzf_: 1vtz f: [197596]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  9. Domain d1vtzg_: 1vtz g: [197597]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  10. Domain d1vtzh_: 1vtz h: [197598]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  11. Domain d1vtzi_: 1vtz i: [197599]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  12. Domain d1vtzj_: 1vtz j: [197600]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  13. Domain d1vtzl_: 1vtz l: [197601]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  14. Domain d1vtzm_: 1vtz m: [197602]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  15. Domain d1vtzn_: 1vtz n: [197603]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  16. Domain d1vtzo_: 1vtz o: [197604]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  17. Domain d1vtzp_: 1vtz p: [197605]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  18. Domain d1vtzq_: 1vtz q: [197606]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  19. Domain d1vtzr_: 1vtz r: [197607]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  20. Domain d1vtzs_: 1vtz s: [197608]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  21. Domain d1vtzt_: 1vtz t: [197609]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  22. Domain d1vtzu_: 1vtz u: [197610]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  23. Domain d1vtzv_: 1vtz v: [197611]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  24. Domain d1vtzw_: 1vtz w: [197612]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  25. Domain d1vtzx_: 1vtz x: [197613]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  26. Domain d1vtzy_: 1vtz y: [197614]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
  27. Domain d1vtzz_: 1vtz z: [197615]
    Other proteins in same PDB: d1vtz5_, d1vtz7_, d1vtzk_
    complexed with ca
    complexed with ca
3. Domain for 2buk:
  - Domain d2buka_: 2buk A: [129220]
    automated match to d2stv__
    complexed with ca
4. Domains for 3rqv:
  1. Domain d3rqva_: 3rqv A: [185099]
    complexed with ca
    complexed with ca
  2. Domain d3rqvb_: 3rqv B: [185100]
    complexed with ca
    complexed with ca
  3. Domain d3rqvc_: 3rqv C: [185101]
    complexed with ca
    complexed with ca
  4. Domain d3rqvd_: 3rqv D: [185102]
    complexed with ca
    complexed with ca
  5. Domain d3rqve_: 3rqv E: [185103]
    complexed with ca
    complexed with ca
  6. Domain d3rqvf_: 3rqv F: [185104]
    complexed with ca
    complexed with ca
  7. Domain d3rqvg_: 3rqv G: [185105]
    complexed with ca
    complexed with ca
  8. Domain d3rqvh_: 3rqv H: [185106]
    complexed with ca
    complexed with ca
  9. Domain d3rqvi_: 3rqv I: [185107]
    complexed with ca
    complexed with ca
  10. Domain d3rqvj_: 3rqv J: [185108]
    complexed with ca
    complexed with ca
  11. Domain d3rqvk_: 3rqv K: [185109]
    complexed with ca
    complexed with ca
  12. Domain d3rqvl_: 3rqv L: [185110]
    complexed with ca
    complexed with ca
  13. Domain d3rqvm_: 3rqv M: [185111]
    complexed with ca
    complexed with ca
  14. Domain d3rqvn_: 3rqv N: [185112]
    complexed with ca
    complexed with ca
  15. Domain d3rqvo_: 3rqv O: [185113]
    complexed with ca
    complexed with ca
  16. Domain d3rqvp_: 3rqv P: [185114]
    complexed with ca
    complexed with ca
  17. Domain d3rqvq_: 3rqv Q: [185115]
    complexed with ca
    complexed with ca
  18. Domain d3rqvr_: 3rqv R: [185116]
    complexed with ca
    complexed with ca
  19. Domain d3rqvs_: 3rqv S: [185117]
    complexed with ca
    complexed with ca
  20. Domain d3rqvt_: 3rqv T: [185118]
    complexed with ca
    complexed with ca
  21. Domain d3rqvu_: 3rqv U: [185119]
    complexed with ca
    complexed with ca
  22. Domain d3rqvv_: 3rqv V: [185120]
    complexed with ca
    complexed with ca
  23. Domain d3rqvw_: 3rqv W: [185121]
    complexed with ca
    complexed with ca
  24. Domain d3rqvx_: 3rqv X: [185122]
    complexed with ca
    complexed with ca
  25. Domain d3rqvy_: 3rqv Y: [185123]
    complexed with ca
    complexed with ca
  26. Domain d3rqvz_: 3rqv Z: [185124]
    complexed with ca
    complexed with ca
5. Domain for 4bcu:
  - Domain d4bcua_: 4bcu A: [219444]
    automated match to d2buka_
    protein/RNA complex; complexed with ca
6. Domains for 4nia:
  1. Domain d4niaa_: 4nia A: [259391]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  2. Domain d4niab_: 4nia B: [259390]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  3. Domain d4niac_: 4nia C: [259392]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  4. Domain d4niad_: 4nia D: [259393]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  5. Domain d4niae_: 4nia E: [259394]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  6. Domain d4niaf_: 4nia F: [259395]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  7. Domain d4niag_: 4nia G: [259396]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  8. Domain d4niah_: 4nia H: [259397]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  9. Domain d4niai_: 4nia I: [259398]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  10. Domain d4niaj_: 4nia J: [259399]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  11. Domain d4niak_: 4nia K: [259400]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  12. Domain d4nial_: 4nia L: [259402]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  13. Domain d4niam_: 4nia M: [259401]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  14. Domain d4nian_: 4nia N: [259403]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
  15. Domain d4niao_: 4nia O: [259404]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
7. Domain for 4oq8:
  - Domain d4oq8a_: 4oq8 A: [259424]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, po4, so4
8. Domains for 4oq9:
  1. Domain d4oq9a_: 4oq9 A: [259426]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  2. Domain d4oq9b_: 4oq9 B: [259425]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  3. Domain d4oq9c_: 4oq9 C: [259421]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  4. Domain d4oq9d_: 4oq9 D: [259423]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  5. Domain d4oq9e_: 4oq9 E: [259428]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  6. Domain d4oq9f_: 4oq9 F: [259422]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  7. Domain d4oq9g_: 4oq9 G: [259427]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  8. Domain d4oq9h_: 4oq9 H: [259432]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  9. Domain d4oq9i_: 4oq9 I: [259431]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  10. Domain d4oq9j_: 4oq9 J: [259436]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  11. Domain d4oq9k_: 4oq9 K: [259433]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  12. Domain d4oq9l_: 4oq9 L: [259435]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  13. Domain d4oq9m_: 4oq9 M: [259430]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  14. Domain d4oq9n_: 4oq9 N: [259429]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4
  15. Domain d4oq9o_: 4oq9 O: [259434]
    automated match to d1a34a_
    protein/RNA complex; complexed with mg, na, po4, so4

More info for Protein STNV coat protein from b.121.7.1: Satellite viruses

Timeline for Protein STNV coat protein from b.121.7.1: Satellite viruses:

Protein STNV coat protein from b.121.7.1: Satellite viruses first appeared (with stable ids) in SCOP 1.55, called Protein STNV coat protein from b.10.1.2: Plant virus proteins
Protein STNV coat protein from b.121.7.1: Satellite viruses appears in SCOPe 2.07