SCOPe 2.04: Protein: Microvirus capsid proteins

Lineage for Protein: Microvirus capsid proteins

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.5: ssDNA viruses [88645] (3 families)
Family b.121.5.1: Microviridae-like VP [49612] (1 protein)
Protein Microvirus capsid proteins [49613] (3 species)
include capsid protein F and spike protein G

Species:

Bacteriophage alpha3 [TaxId:10849] [82008] (2 PDB entries)
1. Domains for 1m06:
  1. Domain d1m06f_: 1m06 F: [78326]
    protein/DNA complex
  2. Domain d1m06g_: 1m06 G: [78327]
    protein/DNA complex
2. Domains for 1rb8:
  1. Domain d1rb8f_: 1rb8 F: [97279]
    protein/DNA complex; complexed with dc
  2. Domain d1rb8g_: 1rb8 G: [97280]
    protein/DNA complex; complexed with dc
Bacteriophage G4 [TaxId:10843] [49615] (1 PDB entry)
- Domains for 1gff:
  1. Domain d1gff1_: 1gff 1: [23279]
  2. Domain d1gff2_: 1gff 2: [23280]
Bacteriophage phi-X174 [TaxId:10847] [49614] (4 PDB entries)
1. Domains for 1al0:
  1. Domain d1al0f_: 1al0 F: [23274]
    Other proteins in same PDB: d1al01_, d1al02_, d1al03_, d1al04_
  2. Domain d1al0g_: 1al0 G: [23275]
    Other proteins in same PDB: d1al01_, d1al02_, d1al03_, d1al04_
2. Domains for 1cd3:
  1. Domain d1cd3f_: 1cd3 F: [23276]
    Other proteins in same PDB: d1cd31_, d1cd32_, d1cd33_, d1cd34_
  2. Domain d1cd3g_: 1cd3 G: [23277]
    Other proteins in same PDB: d1cd31_, d1cd32_, d1cd33_, d1cd34_
3. Domain for 1kvp:
  - Domain d1kvpa_: 1kvp A: [23278]
    chimera with a fragment 1-71 of vp1 from spiroplasma virus SPV4
4. Domains for 2bpa:
  1. Domain d2bpa1_: 2bpa 1: [23272]
    protein/DNA complex
  2. Domain d2bpa2_: 2bpa 2: [23273]
    protein/DNA complex

More info for Protein Microvirus capsid proteins from b.121.5.1: Microviridae-like VP

Timeline for Protein Microvirus capsid proteins from b.121.5.1: Microviridae-like VP:

Protein Microvirus capsid proteins from b.121.5.1: Microviridae-like VP first appeared (with stable ids) in SCOP 1.55, called Protein Bacteriophage capsid proteins from b.10.1.1: Bacteriophage capsid proteins
Protein Microvirus capsid proteins from b.121.5.1: Microviridae-like VP appears in SCOPe 2.03
Protein Microvirus capsid proteins from b.121.5.1: Microviridae-like VP appears in SCOPe 2.05
Protein Microvirus capsid proteins from b.121.5.1: Microviridae-like VP last appears in SCOPe 2.07