SCOPe 2.05: Protein: Synaptogamin I

Lineage for Protein: Synaptogamin I

Root: SCOPe 2.05
Class b: All beta proteins [48724] (176 folds)
Fold b.7: C2 domain-like [49561] (5 superfamilies)
sandwich; 8 strands in 2 sheets; greek-key
Superfamily b.7.1: C2 domain (Calcium/lipid-binding domain, CaLB) [49562] (3 families)
two constituent families are related by circular permutation
Family b.7.1.2: Synaptotagmin-like (S variant) [49575] (11 proteins)
topologically similar to the C-terminal domain of PapD
Protein Synaptogamin I [49576] (2 species)
duplication: contains tandem repeat of two similar domains

Species:

Human (Homo sapiens) [TaxId:9606] [158946] (10 PDB entries)
1. Domain for 2k45:
  - Domain d2k45a_: 2k45 A: [242370]
    automated match to d1byna_
2. Domain for 2k4a:
  - Domain d2k4aa_: 2k4a A: [242371]
    Other proteins in same PDB: d2k4ab_
    automated match to d1byna_
3. Domains for 2k8m:
  1. Domain d2k8ma_: 2k8m A: [242415]
    Other proteins in same PDB: d2k8mb_, d2k8mc_
    automated match to d1byna_
  2. Domain d2k8md_: 2k8m D: [242418]
    Other proteins in same PDB: d2k8mb_, d2k8mc_
    automated match to d1byna_
4. Domains for 2ki6:
  1. Domain d2ki6a_: 2ki6 A: [242524]
    Other proteins in same PDB: d2ki6b_, d2ki6c_, d2ki6d_, d2ki6e_
    automated match to d1byna_
  2. Domain d2ki6f_: 2ki6 F: [242529]
    Other proteins in same PDB: d2ki6b_, d2ki6c_, d2ki6d_, d2ki6e_
    automated match to d1byna_
5. Domain for 2lha:
  - Domain d2lhaa_: 2lha A: [242880]
    automated match to d2yoab_
    complexed with ihp
6. Domains for 2r83:
  1. Domain d2r83a1: 2r83 A:268-418 [151670]
    automated match to d1dqva2
    complexed with cl
  2. Domain d2r83a2: 2r83 A:140-267 [238850]
    automated match to d1dqva1
    complexed with cl
  3. Domain d2r83b1: 2r83 B:268-418 [151671]
    automated match to d1dqva2
    complexed with cl
  4. Domain d2r83b2: 2r83 B:140-267 [238851]
    automated match to d1dqva1
    complexed with cl
7. Domain for 3f00:
  - Domain d3f00a_: 3f00 A: [175368]
    automated match to d1byna_
    complexed with cu, so4
8. Domain for 3f01:
  - Domain d3f01a_: 3f01 A: [175369]
    automated match to d1byna_
    complexed with cu, so4
9. Domain for 3f04:
  - Domain d3f04a_: 3f04 A: [175371]
    automated match to d1byna_
    complexed with so4
10. Domain for 3f05:
  - Domain d3f05a_: 3f05 A: [175372]
    automated match to d1byna_
    complexed with mn, so4
Norway rat (Rattus norvegicus) [TaxId:10116] [49577] (7 PDB entries)
Uniprot P21707 271-419 ! Uniprot P21707 271-419
1. Domain for 1byn:
  - Domain d1byna_: 1byn A: [23193]
    first C2 domain
    complexed with ca
2. Domain for 1k5w:
  - Domain d1k5wa_: 1k5w A: [68212]
    second C2 domain
    complexed with ca
3. Domain for 1rsy:
  - Domain d1rsya_: 1rsy A: [23192]
    first C2 domain
    CASP1
    complexed with so4
4. Domain for 1tjm:
  - Domain d1tjma_: 1tjm A: [107047]
    complexed with gol, sr
5. Domain for 1tjx:
  - Domain d1tjxa_: 1tjx A: [112465]
    complexed with act, ca, gol
6. Domain for 1uov:
  - Domain d1uova_: 1uov A: [107974]
    complexed with ca, gol
7. Domain for 1uow:
  - Domain d1uowa_: 1uow A: [107975]
    complexed with act, ca, gol

More info for Protein Synaptogamin I from b.7.1.2: Synaptotagmin-like (S variant)

Timeline for Protein Synaptogamin I from b.7.1.2: Synaptotagmin-like (S variant):

Protein Synaptogamin I from b.7.1.2: Synaptotagmin-like (S variant) first appeared (with stable ids) in SCOP 1.55
Protein Synaptogamin I from b.7.1.2: Synaptotagmin-like (S variant) appears in SCOPe 2.04
Protein Synaptogamin I from b.7.1.2: Synaptotagmin-like (S variant) appears in SCOPe 2.06
Protein Synaptogamin I from b.7.1.2: Synaptotagmin-like (S variant) appears in the current release, SCOPe 2.08