SCOPe 2.05: Family b.6.1.3: Multidomain cupredoxins

Lineage for Family b.6.1.3: Multidomain cupredoxins

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
   sandwich; 7 strands in 2 sheets, greek-key
   variations: some members have additional 1-2 strands

4. Superfamily b.6.1: Cupredoxins [49503] (8 families)
   contains copper-binding site

5. Family b.6.1.3: Multidomain cupredoxins [49550] (8 proteins)

Proteins:

1. Ascorbate oxidase [49555] (1 species)
   consists of three domains of this fold

   • Species Zucchini (Cucurbita pepo var. medullosa) [TaxId:3663] [49556] (4 PDB entries)

2. Ceruloplasmin [49559] (1 species)
   consists of 6 domains of this fold

   • Species Human (Homo sapiens) [TaxId:9606] [49560] (1 PDB entry)

3. Coagulation factor V [110103] (1 species)

   • Species Cow (Bos taurus) [TaxId:9913] [110104] (1 PDB entry)
     Uniprot Q28107 29-324, 1566-2210

4. Laccase [49557] (5 species)
   consists of three domains of this fold

   1. Species Fungus (Melanocarpus albomyces) [TaxId:204285] [74873] (9 PDB entries)

   2. Species Inky cap fungus (Coprinus cinereus) [TaxId:5346] [49558] (2 PDB entries)

   3. Species Rigidoporus lignosus [TaxId:219653] [110102] (1 PDB entry)
      Uniprot Q6H9H7 22-515

   4. Species Trametes versicolor, laccase 1 [TaxId:5325] [74871] (1 PDB entry)

   5. Species Trametes versicolor, laccase 2 [TaxId:5325] [74872] (1 PDB entry)

5. multi-copper oxidase CueO [69194] (1 species)

   • Species Escherichia coli [TaxId:562] [69195] (29 PDB entries)

6. Nitrite reductase, NIR [49551] (5 species)
   consists of two domains of this fold

   1. Species Achromobacter cycloclastes [TaxId:223] [49552] (15 PDB entries)

   2. Species Alcaligenes faecalis, strain s-6 [TaxId:511] [49553] (31 PDB entries)
      Uniprot P38501

   3. Species Alcaligenes xylosoxidans [TaxId:85698] [49554] (23 PDB entries)
      Uniprot O68601 25-360 ! Uniprot O68601 26-359 ! Uniprot O68601

   4. Species Neisseria gonorrhoeae, AniA [TaxId:485] [69193] (2 PDB entries)

   5. Species Rhodobacter sphaeroides [TaxId:1063] [110101] (8 PDB entries)
      Uniprot Q53239

7. Spore coat protein A, CotA [89219] (2 species)

   1. Species Bacillus subtilis [TaxId:1423] [89220] (9 PDB entries)
      Uniprot P07788

   2. Species Bacillus subtilis [TaxId:224308] [271928] (2 PDB entries)

8. automated matches [226877] (3 species)
   not a true protein

   1. Species Achromobacter cycloclastes [TaxId:223] [274677] (1 PDB entry)

   2. Species Achromobacter xylosoxidans [TaxId:85698] [225099] (10 PDB entries)

   3. Species Alcaligenes xylosoxydans [TaxId:85698] [225578] (2 PDB entries)

More info for Family b.6.1.3: Multidomain cupredoxins

Timeline for Family b.6.1.3: Multidomain cupredoxins:

• Family b.6.1.3: Multidomain cupredoxins first appeared (with stable ids) in SCOP 1.55
  
• Family b.6.1.3: Multidomain cupredoxins appears in SCOPe 2.04
  
• Family b.6.1.3: Multidomain cupredoxins appears in SCOPe 2.06
  
• Family b.6.1.3: Multidomain cupredoxins appears in the current release, SCOPe 2.08