Lineage for Family b.6.1.3: Multidomain cupredoxins

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. Superfamily b.6.1: Cupredoxins [49503] (8 families) (S)
    contains copper-binding site
  5. Family b.6.1.3: Multidomain cupredoxins [49550] (15 proteins)

Proteins:

  1. Ceruloplasmin [49559] (1 species)
    consists of 6 domains of this fold
  2. Coagulation factor V [110103] (1 species)
  3. automated matches [226877] (4 species)
    not a true protein
    1. Species Achromobacter cycloclastes [TaxId:223] [274677] (3 PDB entries)
    2. Species Achromobacter xylosoxidans [TaxId:85698] [225099] (11 PDB entries)
    3. Species Alcaligenes xylosoxydans [TaxId:85698] [225578] (6 PDB entries)
    4. Species Neisseria gonorrhoeae [TaxId:242231] [329297] (2 PDB entries)
  4. Ascorbate oxidase, N-terminal domain [418902] (1 species)
    protein consists of three domains of this fold
  5. Ascorbate oxidase, middle domain [418903] (1 species)
    protein consists of three domains of this fold
  6. Ascorbate oxidase, C-terminal domain [418904] (1 species)
    protein consists of three domains of this fold
  7. Laccase, N-terminal domain [418905] (5 species)
    1. Species Fungus (Melanocarpus albomyces) [TaxId:204285] [419307] (9 PDB entries)
    2. Species Inky cap fungus (Coprinus cinereus) [TaxId:5346] [419310] (2 PDB entries)
    3. Species Rigidoporus lignosus [TaxId:219653] [419313] (1 PDB entry)
      Uniprot Q6H9H7 22-515
    4. Species Trametes versicolor, laccase 1 [TaxId:5325] [419316] (1 PDB entry)
    5. Species Trametes versicolor, laccase 2 [TaxId:5325] [419319] (1 PDB entry)
  8. Laccase, middle domain [418906] (5 species)
    1. Species Fungus (Melanocarpus albomyces) [TaxId:204285] [419308] (9 PDB entries)
    2. Species Inky cap fungus (Coprinus cinereus) [TaxId:5346] [419311] (2 PDB entries)
    3. Species Rigidoporus lignosus [TaxId:219653] [419314] (1 PDB entry)
      Uniprot Q6H9H7 22-515
    4. Species Trametes versicolor, laccase 1 [TaxId:5325] [419317] (1 PDB entry)
    5. Species Trametes versicolor, laccase 2 [TaxId:5325] [419320] (1 PDB entry)
  9. Laccase, C-terminal domain [418907] (5 species)
    1. Species Fungus (Melanocarpus albomyces) [TaxId:204285] [419309] (9 PDB entries)
    2. Species Inky cap fungus (Coprinus cinereus) [TaxId:5346] [419312] (2 PDB entries)
    3. Species Rigidoporus lignosus [TaxId:219653] [419315] (1 PDB entry)
      Uniprot Q6H9H7 22-515
    4. Species Trametes versicolor, laccase 1 [TaxId:5325] [419318] (1 PDB entry)
    5. Species Trametes versicolor, laccase 2 [TaxId:5325] [419321] (1 PDB entry)
  10. multi-copper oxidase CueO, N- and middle domain [418908] (1 species)
  11. multi-copper oxidase CueO, C-terminal domain [418909] (1 species)
  12. Nitrite reductase, NIR, N-terminal domain [418910] (5 species)
    1. Species Achromobacter cycloclastes [TaxId:223] [419324] (51 PDB entries)
    2. Species Alcaligenes faecalis, strain s-6 [TaxId:511] [419326] (31 PDB entries)
      Uniprot P38501
    3. Species Alcaligenes xylosoxidans [TaxId:85698] [419328] (24 PDB entries)
      Uniprot O68601
    4. Species Neisseria gonorrhoeae, AniA [TaxId:485] [419330] (2 PDB entries)
    5. Species Rhodobacter sphaeroides [TaxId:1063] [419332] (8 PDB entries)
      Uniprot Q53239
  13. Nitrite reductase, NIR, C-terminal domain [418911] (5 species)
    1. Species Achromobacter cycloclastes [TaxId:223] [419325] (60 PDB entries)
    2. Species Alcaligenes faecalis, strain s-6 [TaxId:511] [419327] (31 PDB entries)
      Uniprot P38501
    3. Species Alcaligenes xylosoxidans [TaxId:85698] [419329] (24 PDB entries)
      Uniprot O68601
    4. Species Neisseria gonorrhoeae, AniA [TaxId:485] [419331] (2 PDB entries)
    5. Species Rhodobacter sphaeroides [TaxId:1063] [419333] (8 PDB entries)
      Uniprot Q53239
  14. Spore coat protein A, CotA, N- and C-terminal domain [418912] (2 species)
    1. Species Bacillus subtilis [TaxId:1423] [419334] (13 PDB entries)
      Uniprot P07788
    2. Species Bacillus subtilis [TaxId:224308] [419336] (8 PDB entries)
  15. Spore coat protein A, CotA, middle domain [418913] (2 species)
    1. Species Bacillus subtilis [TaxId:1423] [419335] (13 PDB entries)
      Uniprot P07788
    2. Species Bacillus subtilis [TaxId:224308] [419337] (8 PDB entries)

More info for Family b.6.1.3: Multidomain cupredoxins

Timeline for Family b.6.1.3: Multidomain cupredoxins: