SCOPe 2.08: Family b.6.1.3: Multidomain cupredoxins

Lineage for Family b.6.1.3: Multidomain cupredoxins

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
   sandwich; 7 strands in 2 sheets, greek-key
   variations: some members have additional 1-2 strands

4. Superfamily b.6.1: Cupredoxins [49503] (8 families)
   contains copper-binding site

5. Family b.6.1.3: Multidomain cupredoxins [49550] (15 proteins)

Proteins:

1. Ascorbate oxidase, C-terminal domain [418904] (1 species)
   protein consists of three domains of this fold
   • Species Zucchini (Cucurbita pepo var. medullosa) [TaxId:3663] [419306] (4 PDB entries)
2. Ascorbate oxidase, middle domain [418903] (1 species)
   protein consists of three domains of this fold
   • Species Zucchini (Cucurbita pepo var. medullosa) [TaxId:3663] [419305] (4 PDB entries)

3. Ascorbate oxidase, N-terminal domain [418902] (1 species)
   protein consists of three domains of this fold

   • Species Zucchini (Cucurbita pepo var. medullosa) [TaxId:3663] [419304] (4 PDB entries)

4. Ceruloplasmin [49559] (1 species)
   consists of 6 domains of this fold

   • Species Human (Homo sapiens) [TaxId:9606] [49560] (1 PDB entry)

5. Coagulation factor V [110103] (1 species)

   • Species Cow (Bos taurus) [TaxId:9913] [110104] (1 PDB entry)
     Uniprot Q28107 29-324, 1566-2210

6. Laccase, C-terminal domain [418907] (5 species)

   1. Species Fungus (Melanocarpus albomyces) [TaxId:204285] [419309] (9 PDB entries)

   2. Species Inky cap fungus (Coprinus cinereus) [TaxId:5346] [419312] (2 PDB entries)

   3. Species Rigidoporus lignosus [TaxId:219653] [419315] (1 PDB entry)
      Uniprot Q6H9H7 22-515

   4. Species Trametes versicolor, laccase 1 [TaxId:5325] [419318] (1 PDB entry)

   5. Species Trametes versicolor, laccase 2 [TaxId:5325] [419321] (1 PDB entry)

7. Laccase, middle domain [418906] (5 species)

   1. Species Fungus (Melanocarpus albomyces) [TaxId:204285] [419308] (9 PDB entries)

   2. Species Inky cap fungus (Coprinus cinereus) [TaxId:5346] [419311] (2 PDB entries)

   3. Species Rigidoporus lignosus [TaxId:219653] [419314] (1 PDB entry)
      Uniprot Q6H9H7 22-515

   4. Species Trametes versicolor, laccase 1 [TaxId:5325] [419317] (1 PDB entry)

   5. Species Trametes versicolor, laccase 2 [TaxId:5325] [419320] (1 PDB entry)

8. Laccase, N-terminal domain [418905] (5 species)

   1. Species Fungus (Melanocarpus albomyces) [TaxId:204285] [419307] (9 PDB entries)

   2. Species Inky cap fungus (Coprinus cinereus) [TaxId:5346] [419310] (2 PDB entries)

   3. Species Rigidoporus lignosus [TaxId:219653] [419313] (1 PDB entry)
      Uniprot Q6H9H7 22-515

   4. Species Trametes versicolor, laccase 1 [TaxId:5325] [419316] (1 PDB entry)

   5. Species Trametes versicolor, laccase 2 [TaxId:5325] [419319] (1 PDB entry)

9. multi-copper oxidase CueO, C-terminal domain [418909] (1 species)

   • Species Escherichia coli [TaxId:562] [419323] (38 PDB entries)

10. multi-copper oxidase CueO, N- and middle domain [418908] (1 species)

    • Species Escherichia coli [TaxId:562] [419322] (38 PDB entries)

11. Nitrite reductase, NIR, C-terminal domain [418911] (5 species)

    1. Species Achromobacter cycloclastes [TaxId:223] [419325] (60 PDB entries)

    2. Species Alcaligenes faecalis, strain s-6 [TaxId:511] [419327] (31 PDB entries)
       Uniprot P38501

    3. Species Alcaligenes xylosoxidans [TaxId:85698] [419329] (24 PDB entries)
       Uniprot O68601

    4. Species Neisseria gonorrhoeae, AniA [TaxId:485] [419331] (2 PDB entries)

    5. Species Rhodobacter sphaeroides [TaxId:1063] [419333] (8 PDB entries)
       Uniprot Q53239

12. Nitrite reductase, NIR, N-terminal domain [418910] (5 species)

    1. Species Achromobacter cycloclastes [TaxId:223] [419324] (51 PDB entries)

    2. Species Alcaligenes faecalis, strain s-6 [TaxId:511] [419326] (31 PDB entries)
       Uniprot P38501

    3. Species Alcaligenes xylosoxidans [TaxId:85698] [419328] (24 PDB entries)
       Uniprot O68601

    4. Species Neisseria gonorrhoeae, AniA [TaxId:485] [419330] (2 PDB entries)

    5. Species Rhodobacter sphaeroides [TaxId:1063] [419332] (8 PDB entries)
       Uniprot Q53239

13. Spore coat protein A, CotA, middle domain [418913] (2 species)

    1. Species Bacillus subtilis [TaxId:1423] [419335] (13 PDB entries)
       Uniprot P07788

    2. Species Bacillus subtilis [TaxId:224308] [419337] (8 PDB entries)

14. Spore coat protein A, CotA, N- and C-terminal domain [418912] (2 species)

    1. Species Bacillus subtilis [TaxId:1423] [419334] (13 PDB entries)
       Uniprot P07788

    2. Species Bacillus subtilis [TaxId:224308] [419336] (8 PDB entries)

15. automated matches [226877] (4 species)
    not a true protein

    1. Species Achromobacter cycloclastes [TaxId:223] [274677] (3 PDB entries)

    2. Species Achromobacter xylosoxidans [TaxId:85698] [225099] (11 PDB entries)

    3. Species Alcaligenes xylosoxydans [TaxId:85698] [225578] (6 PDB entries)

    4. Species Neisseria gonorrhoeae [TaxId:242231] [329297] (2 PDB entries)

More info for Family b.6.1.3: Multidomain cupredoxins

Timeline for Family b.6.1.3: Multidomain cupredoxins:

• Family b.6.1.3: Multidomain cupredoxins first appeared (with stable ids) in SCOP 1.55
  
• Family b.6.1.3: Multidomain cupredoxins appears in SCOPe 2.07