SCOPe 2.05: Family b.6.1.1: Plastocyanin/azurin-like

Lineage for Family b.6.1.1: Plastocyanin/azurin-like

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
   sandwich; 7 strands in 2 sheets, greek-key
   variations: some members have additional 1-2 strands

4. Superfamily b.6.1: Cupredoxins [49503] (8 families)
   contains copper-binding site

5. Family b.6.1.1: Plastocyanin/azurin-like [49504] (10 proteins)
   mono-domain proteins

Proteins:

1. Amicyanin [49505] (2 species)

   1. Species Paracoccus denitrificans [TaxId:266] [49506] (35 PDB entries)
      Uniprot P22364

   2. Species Paracoccus versutus (Thiobacillus versutus) [TaxId:34007] [63685] (1 PDB entry)

2. Auracyanin [63686] (1 species)
   azurin-related protein

   • Species Chloroflexus aurantiacus [TaxId:1108] [63687] (2 PDB entries)

3. Azurin [49530] (6 species)

   1. Species Alcaligenes denitrificans [TaxId:32002] [49531] (8 PDB entries)

   2. Species Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId:85698] [49532] (4 PDB entries)

   3. Species Methylomonas sp. j [TaxId:32038] [49536] (2 PDB entries)

   4. Species Pseudomonas aeruginosa [TaxId:287] [49533] (87 PDB entries)
      Uniprot P00282

   5. Species Pseudomonas fluorescens [TaxId:294] [49534] (1 PDB entry)

   6. Species Pseudomonas putida [TaxId:303] [49535] (2 PDB entries)

4. Mavicyanin [117080] (1 species)
   Plantacyanin and stellacyanin homologue

   • Species Zucchini (Cucurbita pepo) [TaxId:3663] [117081] (2 PDB entries)
     Uniprot P80728

5. Plantacyanin [49527] (2 species)
   basic blue protein

   1. Species Cucumber (Cucumis sativus) [TaxId:3659] [49528] (1 PDB entry)

   2. Species Spinach (Spinacia oleracea) [TaxId:3562] [49529] (1 PDB entry)

6. Plastocyanin [49507] (16 species)

   1. Species Anabaena variabilis [TaxId:1172] [49517] (4 PDB entries)

   2. Species Dryopteris crassirhizoma [TaxId:97234] [187501] (2 PDB entries)

   3. Species Fern (Adiantum capillus-veneris) [TaxId:13818] [49516] (2 PDB entries)

   4. Species French bean (Phaseolus vulgaris) [TaxId:3885] [49509] (1 PDB entry)

   5. Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [49514] (1 PDB entry)

   6. Species Green alga (Enteromorpha prolifera) [TaxId:3117] [49515] (1 PDB entry)

   7. Species Nostoc sp. PCC 7120 [TaxId:103690] [187031] (1 PDB entry)

   8. Species Parsley (Petroselinum crispum) [TaxId:4043] [49510] (2 PDB entries)

   9. Species Phormidium laminosum [TaxId:32059] [49518] (8 PDB entries)

   10. Species Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId:1223] [49521] (3 PDB entries)

   11. Species Poplar (Populus nigra), variant italica [TaxId:3691] [49508] (16 PDB entries)

   12. Species Spinach (Spinacia oleracea) [TaxId:3562] [49511] (4 PDB entries)

   13. Species Synechocystis sp. PCC 6803 [TaxId:1148] [49519] (6 PDB entries)

   14. Species Synechocystis sp., pcc 7942 [TaxId:1143] [49520] (2 PDB entries)

   15. Species Ulva pertusa, a sea lettuce [TaxId:3120] [49513] (1 PDB entry)

   16. Species White campion (Silene pratensis) [TaxId:52853] [49512] (2 PDB entries)

7. Pseudoazurin [49522] (4 species)

   1. Species Achromobacter cycloclastes [TaxId:223] [49525] (4 PDB entries)

   2. Species Alcaligenes faecalis, strain s-6 [TaxId:511] [49523] (13 PDB entries)
      Uniprot P04377

   3. Species Methylobacterium extorquens, strain am1 [TaxId:408] [49524] (1 PDB entry)

   4. Species Thiosphaera pantotropha [TaxId:82367] [49526] (5 PDB entries)

8. Rusticyanin [49537] (1 species)

   • Species Thiobacillus ferrooxidans [TaxId:920] [49538] (7 PDB entries)

9. Stellacyanin [49539] (1 species)

   • Species Cucumber (Cucumis sativus) [TaxId:3659] [49540] (1 PDB entry)

10. automated matches [190545] (8 species)
    not a true protein

    1. Species Achromobacter cycloclastes [TaxId:223] [188032] (5 PDB entries)

    2. Species Alcaligenes faecalis [TaxId:511] [187784] (3 PDB entries)

    3. Species Paracoccus versutus [TaxId:34007] [225566] (1 PDB entry)

    4. Species Populus nigra [TaxId:3691] [194010] (6 PDB entries)

    5. Species Pseudomonas aeruginosa [TaxId:208964] [256578] (1 PDB entry)

    6. Species Pseudomonas aeruginosa [TaxId:287] [187720] (5 PDB entries)

    7. Species Spinach (Spinacia oleracea) [TaxId:3562] [254983] (1 PDB entry)

    8. Species Thiobacillus ferrooxidans [TaxId:920] [187525] (1 PDB entry)

More info for Family b.6.1.1: Plastocyanin/azurin-like

Timeline for Family b.6.1.1: Plastocyanin/azurin-like:

• Family b.6.1.1: Plastocyanin/azurin-like first appeared (with stable ids) in SCOP 1.55
  
• Family b.6.1.1: Plastocyanin/azurin-like appears in SCOPe 2.04
  
• Family b.6.1.1: Plastocyanin/azurin-like appears in SCOPe 2.06
  
• Family b.6.1.1: Plastocyanin/azurin-like appears in the current release, SCOPe 2.08