SCOPe 2.08: Family b.2.2.2: Cellulose-binding domain family III

Lineage for Family b.2.2.2: Cellulose-binding domain family III

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
   sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold

4. Superfamily b.2.2: Carbohydrate-binding domain [49384] (4 families)

5. Family b.2.2.2: Cellulose-binding domain family III [49390] (9 proteins)
   Pfam PF00963

Proteins:

1. Cellulosomal scaffoldin adaptor protein B, ScaB [110073] (1 species)

   • Species Acetivibrio cellulolyticus [TaxId:35830] [110074] (8 PDB entries)
     Uniprot Q7WYN3 29-199

2. Cellulosomal scaffoldin ScaA [141076] (1 species)

   • Species Bacteroides cellulosolvens [TaxId:35825] [141077] (1 PDB entry)
     Uniprot Q9FDJ9 2073-2242

3. Cellusomal scaffolding protein A, scaffoldin [49391] (3 species)

   1. Species Clostridium cellulolyticum [TaxId:1521] [49393] (1 PDB entry)

   2. Species Clostridium thermocellum [TaxId:1515] [49392] (1 PDB entry)

   3. Species Clostridium thermocellum [TaxId:203119] [194716] (1 PDB entry)

4. Cohesin domain [49396] (2 species)

   1. Species Clostridium cellulolyticum [TaxId:1521] [158919] (2 PDB entries)

   2. Species Clostridium thermocellum, cellulosome, various modules [TaxId:1515] [49397] (4 PDB entries)

5. Endo/exocellulase:cellobiose E-4, C-terminal domain [49394] (2 species)

   1. Species Clostridium cellulolyticum, atcc 35319 [TaxId:1521] [89209] (4 PDB entries)
      endoglucanase 9G

   2. Species Thermobifida fusca [TaxId:2021] [49395] (4 PDB entries)

6. Exo-alpha-sialidase [158920] (1 species)
   pre C-terminal domain

   • Species Clostridium perfringens [TaxId:1502] [158921] (1 PDB entry)
     Uniprot Q0TTQ4 945-1080

7. O-GlcNAcase NagJ [158922] (1 species)
   pre C-terminal domain

   • Species Clostridium perfringens [TaxId:1502] [158923] (3 PDB entries)
     Uniprot Q0TR53 768-909! Uniprot Q0TR53 774-906

8. Scaffolding dockerin binding protein A, SdbA [141078] (1 species)

   • Species Clostridium thermocellum [TaxId:1515] [141079] (4 PDB entries)
     Uniprot P71143 30-191! Uniprot P71143 30-195

9. automated matches [190248] (6 species)
   not a true protein

   1. Species Acetivibrio cellulolyticus [TaxId:35830] [188707] (3 PDB entries)

   2. Species Bacteroides cellulosolvens [TaxId:35825] [189867] (1 PDB entry)

   3. Species Clostridium perfringens [TaxId:1502] [188248] (1 PDB entry)

   4. Species Clostridium thermocellum [TaxId:1094188] [224858] (1 PDB entry)

   5. Species Clostridium thermocellum [TaxId:1515] [187024] (1 PDB entry)

   6. Species Clostridium thermocellum [TaxId:203119] [189219] (2 PDB entries)

More info for Family b.2.2.2: Cellulose-binding domain family III

Timeline for Family b.2.2.2: Cellulose-binding domain family III:

• Family b.2.2.2: Cellulose-binding domain family III first appeared (with stable ids) in SCOP 1.55
  
• Family b.2.2.2: Cellulose-binding domain family III appears in SCOPe 2.07