SCOPe 2.04: Protein: Transglutaminase, two C-terminal domains

Lineage for Protein: Transglutaminase, two C-terminal domains

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.5: Transglutaminase, two C-terminal domains [49309] (2 families)
automatically mapped to Pfam PF00927
Family b.1.5.1: Transglutaminase, two C-terminal domains [49310] (1 protein)
Protein Transglutaminase, two C-terminal domains [49311] (4 species)
duplication

Species:

Human (Homo sapiens), blood isozyme [TaxId:9606] [49312] (8 PDB entries)
Coagulation factor XIII,
1. Domains for 1evu:
  1. Domain d1evua2: 1evu A:516-627 [22175]
    Other proteins in same PDB: d1evua1, d1evua4, d1evub1, d1evub4
    complexed with ca, pgo
  2. Domain d1evua3: 1evu A:628-727 [22176]
    Other proteins in same PDB: d1evua1, d1evua4, d1evub1, d1evub4
    complexed with ca, pgo
  3. Domain d1evub2: 1evu B:515-627 [22177]
    Other proteins in same PDB: d1evua1, d1evua4, d1evub1, d1evub4
    complexed with ca, pgo
  4. Domain d1evub3: 1evu B:628-727 [22178]
    Other proteins in same PDB: d1evua1, d1evua4, d1evub1, d1evub4
    complexed with ca, pgo
2. Domains for 1ex0:
  1. Domain d1ex0a2: 1ex0 A:516-627 [90466]
    Other proteins in same PDB: d1ex0a1, d1ex0a4, d1ex0b1, d1ex0b4
    complexed with ca, pgo, po4; mutant
  2. Domain d1ex0a3: 1ex0 A:628-727 [90467]
    Other proteins in same PDB: d1ex0a1, d1ex0a4, d1ex0b1, d1ex0b4
    complexed with ca, pgo, po4; mutant
  3. Domain d1ex0b2: 1ex0 B:517-627 [90470]
    Other proteins in same PDB: d1ex0a1, d1ex0a4, d1ex0b1, d1ex0b4
    complexed with ca, pgo, po4; mutant
  4. Domain d1ex0b3: 1ex0 B:628-730 [90471]
    Other proteins in same PDB: d1ex0a1, d1ex0a4, d1ex0b1, d1ex0b4
    complexed with ca, pgo, po4; mutant
3. Domains for 1f13:
  1. Domain d1f13a2: 1f13 A:516-627 [22163]
    Other proteins in same PDB: d1f13a1, d1f13a4, d1f13b1, d1f13b4
  2. Domain d1f13a3: 1f13 A:628-728 [22164]
    Other proteins in same PDB: d1f13a1, d1f13a4, d1f13b1, d1f13b4
  3. Domain d1f13b2: 1f13 B:516-627 [22165]
    Other proteins in same PDB: d1f13a1, d1f13a4, d1f13b1, d1f13b4
  4. Domain d1f13b3: 1f13 B:628-728 [22166]
    Other proteins in same PDB: d1f13a1, d1f13a4, d1f13b1, d1f13b4
4. Domains for 1fie:
  1. Domain d1fiea2: 1fie A:516-627 [22167]
    Other proteins in same PDB: d1fiea1, d1fiea4, d1fieb1, d1fieb4
  2. Domain d1fiea3: 1fie A:628-727 [22168]
    Other proteins in same PDB: d1fiea1, d1fiea4, d1fieb1, d1fieb4
  3. Domain d1fieb2: 1fie B:516-627 [22169]
    Other proteins in same PDB: d1fiea1, d1fiea4, d1fieb1, d1fieb4
  4. Domain d1fieb3: 1fie B:628-727 [22170]
    Other proteins in same PDB: d1fiea1, d1fiea4, d1fieb1, d1fieb4
5. Domains for 1ggt:
  1. Domain d1ggta2: 1ggt A:516-627 [22171]
    Other proteins in same PDB: d1ggta1, d1ggta4, d1ggtb1, d1ggtb4
  2. Domain d1ggta3: 1ggt A:628-729 [22172]
    Other proteins in same PDB: d1ggta1, d1ggta4, d1ggtb1, d1ggtb4
  3. Domain d1ggtb2: 1ggt B:516-627 [22173]
    Other proteins in same PDB: d1ggta1, d1ggta4, d1ggtb1, d1ggtb4
  4. Domain d1ggtb3: 1ggt B:628-727 [22174]
    Other proteins in same PDB: d1ggta1, d1ggta4, d1ggtb1, d1ggtb4
6. Domains for 1ggu:
  1. Domain d1ggua2: 1ggu A:516-627 [22179]
    Other proteins in same PDB: d1ggua1, d1ggua4, d1ggub1, d1ggub4
    complexed with ca
  2. Domain d1ggua3: 1ggu A:628-727 [22180]
    Other proteins in same PDB: d1ggua1, d1ggua4, d1ggub1, d1ggub4
    complexed with ca
  3. Domain d1ggub2: 1ggu B:516-627 [22181]
    Other proteins in same PDB: d1ggua1, d1ggua4, d1ggub1, d1ggub4
    complexed with ca
  4. Domain d1ggub3: 1ggu B:628-727 [22182]
    Other proteins in same PDB: d1ggua1, d1ggua4, d1ggub1, d1ggub4
    complexed with ca
7. Domains for 1ggy:
  1. Domain d1ggya2: 1ggy A:516-627 [22183]
    Other proteins in same PDB: d1ggya1, d1ggya4, d1ggyb1, d1ggyb4
    complexed with yb
  2. Domain d1ggya3: 1ggy A:628-727 [22184]
    Other proteins in same PDB: d1ggya1, d1ggya4, d1ggyb1, d1ggyb4
    complexed with yb
  3. Domain d1ggyb2: 1ggy B:516-627 [22185]
    Other proteins in same PDB: d1ggya1, d1ggya4, d1ggyb1, d1ggyb4
    complexed with yb
  4. Domain d1ggyb3: 1ggy B:628-727 [22186]
    Other proteins in same PDB: d1ggya1, d1ggya4, d1ggyb1, d1ggyb4
    complexed with yb
8. Domains for 1qrk:
  1. Domain d1qrka2: 1qrk A:517-627 [22187]
    Other proteins in same PDB: d1qrka1, d1qrka4, d1qrkb1, d1qrkb4
    complexed with sr
  2. Domain d1qrka3: 1qrk A:628-727 [22188]
    Other proteins in same PDB: d1qrka1, d1qrka4, d1qrkb1, d1qrkb4
    complexed with sr
  3. Domain d1qrkb2: 1qrk B:516-627 [22189]
    Other proteins in same PDB: d1qrka1, d1qrka4, d1qrkb1, d1qrkb4
    complexed with sr
  4. Domain d1qrkb3: 1qrk B:628-727 [22190]
    Other proteins in same PDB: d1qrka1, d1qrka4, d1qrkb1, d1qrkb4
    complexed with sr
Human (Homo sapiens), TGase E3 [TaxId:9606] [74850] (5 PDB entries)
1. Domains for 1l9m:
  1. Domain d1l9ma2: 1l9m A:479-593 [73733]
    Other proteins in same PDB: d1l9ma1, d1l9ma4, d1l9mb1, d1l9mb4
    complexed with br, ca, cl
  2. Domain d1l9ma3: 1l9m A:594-692 [73734]
    Other proteins in same PDB: d1l9ma1, d1l9ma4, d1l9mb1, d1l9mb4
    complexed with br, ca, cl
  3. Domain d1l9mb2: 1l9m B:472-593 [73737]
    Other proteins in same PDB: d1l9ma1, d1l9ma4, d1l9mb1, d1l9mb4
    complexed with br, ca, cl
  4. Domain d1l9mb3: 1l9m B:594-692 [73738]
    Other proteins in same PDB: d1l9ma1, d1l9ma4, d1l9mb1, d1l9mb4
    complexed with br, ca, cl
2. Domains for 1l9n:
  1. Domain d1l9na2: 1l9n A:480-593 [73741]
    Other proteins in same PDB: d1l9na1, d1l9na4, d1l9nb1, d1l9nb4
    complexed with bgl, ca, cl
  2. Domain d1l9na3: 1l9n A:594-692 [73742]
    Other proteins in same PDB: d1l9na1, d1l9na4, d1l9nb1, d1l9nb4
    complexed with bgl, ca, cl
  3. Domain d1l9nb2: 1l9n B:480-593 [73745]
    Other proteins in same PDB: d1l9na1, d1l9na4, d1l9nb1, d1l9nb4
    complexed with bgl, ca, cl
  4. Domain d1l9nb3: 1l9n B:594-692 [73746]
    Other proteins in same PDB: d1l9na1, d1l9na4, d1l9nb1, d1l9nb4
    complexed with bgl, ca, cl
3. Domains for 1nud:
  1. Domain d1nuda2: 1nud A:480-593 [86175]
    Other proteins in same PDB: d1nuda1, d1nuda4, d1nudb1, d1nudb4
    complexed with br, ca, cl
  2. Domain d1nuda3: 1nud A:594-692 [86176]
    Other proteins in same PDB: d1nuda1, d1nuda4, d1nudb1, d1nudb4
    complexed with br, ca, cl
  3. Domain d1nudb2: 1nud B:480-593 [86179]
    Other proteins in same PDB: d1nuda1, d1nuda4, d1nudb1, d1nudb4
    complexed with br, ca, cl
  4. Domain d1nudb3: 1nud B:594-692 [86180]
    Other proteins in same PDB: d1nuda1, d1nuda4, d1nudb1, d1nudb4
    complexed with br, ca, cl
4. Domains for 1nuf:
  1. Domain d1nufa2: 1nuf A:479-593 [86183]
    Other proteins in same PDB: d1nufa1, d1nufa4
    complexed with br, ca, cl
  2. Domain d1nufa3: 1nuf A:594-692 [86184]
    Other proteins in same PDB: d1nufa1, d1nufa4
    complexed with br, ca, cl
5. Domains for 1nug:
  1. Domain d1nuga2: 1nug A:479-593 [86187]
    Other proteins in same PDB: d1nuga1, d1nuga4, d1nugb1, d1nugb4
    complexed with ca, cl, mg
  2. Domain d1nuga3: 1nug A:594-692 [86188]
    Other proteins in same PDB: d1nuga1, d1nuga4, d1nugb1, d1nugb4
    complexed with ca, cl, mg
  3. Domain d1nugb2: 1nug B:473-593 [86191]
    Other proteins in same PDB: d1nuga1, d1nuga4, d1nugb1, d1nugb4
    complexed with ca, cl, mg
  4. Domain d1nugb3: 1nug B:594-692 [86192]
    Other proteins in same PDB: d1nuga1, d1nuga4, d1nugb1, d1nugb4
    complexed with ca, cl, mg
Human (Homo sapiens), tissue isozyme [TaxId:9606] [74849] (3 PDB entries)
GDP-binding protein
1. Domains for 1kv3:
  1. Domain d1kv3a2: 1kv3 A:469-585 [73028]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  2. Domain d1kv3a3: 1kv3 A:586-687 [73029]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  3. Domain d1kv3b2: 1kv3 B:469-585 [73032]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  4. Domain d1kv3b3: 1kv3 B:586-687 [73033]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  5. Domain d1kv3c2: 1kv3 C:469-585 [73036]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  6. Domain d1kv3c3: 1kv3 C:586-687 [73037]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  7. Domain d1kv3d2: 1kv3 D:469-585 [73040]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  8. Domain d1kv3d3: 1kv3 D:586-687 [73041]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  9. Domain d1kv3e2: 1kv3 E:469-585 [73044]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  10. Domain d1kv3e3: 1kv3 E:586-687 [73045]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  11. Domain d1kv3f2: 1kv3 F:469-585 [73048]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
  12. Domain d1kv3f3: 1kv3 F:586-687 [73049]
    Other proteins in same PDB: d1kv3a1, d1kv3a4, d1kv3b1, d1kv3b4, d1kv3c1, d1kv3c4, d1kv3d1, d1kv3d4, d1kv3e1, d1kv3e4, d1kv3f1, d1kv3f4
    complexed with gdp
2. Domains for 2q3z:
  1. Domain d2q3za2: 2q3z A:472-585 [150038]
    Other proteins in same PDB: d2q3za1, d2q3za4
    automatically matched to d1kv3a2
    complexed with so4
  2. Domain d2q3za3: 2q3z A:586-683 [150039]
    Other proteins in same PDB: d2q3za1, d2q3za4
    automatically matched to d1kv3a3
    complexed with so4
3. Domains for 3ly6:
  1. Domain d3ly6a3: 3ly6 A:469-585 [247546]
    Other proteins in same PDB: d3ly6a1, d3ly6a2, d3ly6b1, d3ly6b2, d3ly6c1, d3ly6c2
    automated match to d1kv3a2
    complexed with atp
  2. Domain d3ly6a4: 3ly6 A:586-688 [247547]
    Other proteins in same PDB: d3ly6a1, d3ly6a2, d3ly6b1, d3ly6b2, d3ly6c1, d3ly6c2
    automated match to d1kv3a3
    complexed with atp
  3. Domain d3ly6b3: 3ly6 B:469-585 [247550]
    Other proteins in same PDB: d3ly6a1, d3ly6a2, d3ly6b1, d3ly6b2, d3ly6c1, d3ly6c2
    automated match to d1kv3a2
    complexed with atp
  4. Domain d3ly6b4: 3ly6 B:586-688 [247551]
    Other proteins in same PDB: d3ly6a1, d3ly6a2, d3ly6b1, d3ly6b2, d3ly6c1, d3ly6c2
    automated match to d1kv3a3
    complexed with atp
  5. Domain d3ly6c3: 3ly6 C:469-585 [247554]
    Other proteins in same PDB: d3ly6a1, d3ly6a2, d3ly6b1, d3ly6b2, d3ly6c1, d3ly6c2
    automated match to d1kv3a2
    complexed with atp
  6. Domain d3ly6c4: 3ly6 C:586-688 [247555]
    Other proteins in same PDB: d3ly6a1, d3ly6a2, d3ly6b1, d3ly6b2, d3ly6c1, d3ly6c2
    automated match to d1kv3a3
    complexed with atp
Red sea bream (Chrysophrys major) [TaxId:143350] [63674] (1 PDB entry)
- Domains for 1g0d:
  1. Domain d1g0da2: 1g0d A:472-583 [60167]
    Other proteins in same PDB: d1g0da1, d1g0da4
    complexed with so4
  2. Domain d1g0da3: 1g0d A:584-684 [60168]
    Other proteins in same PDB: d1g0da1, d1g0da4
    complexed with so4

More info for Protein Transglutaminase, two C-terminal domains from b.1.5.1: Transglutaminase, two C-terminal domains

Timeline for Protein Transglutaminase, two C-terminal domains from b.1.5.1: Transglutaminase, two C-terminal domains:

Protein Transglutaminase, two C-terminal domains from b.1.5.1: Transglutaminase, two C-terminal domains first appeared (with stable ids) in SCOP 1.55, called Protein Coagulation factor XIII, two C-terminal domains from b.1.5.1: Transglutaminase
Protein Transglutaminase, two C-terminal domains from b.1.5.1: Transglutaminase, two C-terminal domains appears in SCOPe 2.03
Protein Transglutaminase, two C-terminal domains from b.1.5.1: Transglutaminase, two C-terminal domains appears in SCOPe 2.05
Protein Transglutaminase, two C-terminal domains from b.1.5.1: Transglutaminase, two C-terminal domains appears in the current release, SCOPe 2.08