SCOP 1.59: Family b.1.1.5: E set domains

Lineage for Family b.1.1.5: E set domains

1. Root: SCOP 1.59

2. Class b: All beta proteins [48724] (110 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (15 superfamilies)

4. Superfamily b.1.1: Immunoglobulin [48726] (6 families)

5. Family b.1.1.5: E set domains [49208] (25 proteins)

Proteins:

1. Arrestin [49244] (2 species)

   1. Species Cow (Bos taurus), beta-arrestin 1 [TaxId:9913] [69169] (2 PDB entries)

   2. Species Cow (Bos taurus), visual arrestin [TaxId:9913] [49245] (2 PDB entries)

2. Bacterial chitobiase, c-terminal domain [49211] (1 species)

   • Species Serratia marcescens [TaxId:615] [49212] (4 PDB entries)

3. C-terminal domain of octopus hemocyanin [69165] (1 species)

   • Species Giant octopus (Octopus dofleini) [TaxId:267067] [69166] (1 PDB entry)

4. CelD cellulase, N-terminal domain [49231] (1 species)

   • Species Clostridium thermocellum [TaxId:1515] [49232] (1 PDB entry)

5. Chitinase A, N-terminal domain [49233] (1 species)

   • Species Serratia marcescens [TaxId:615] [49234] (5 PDB entries)

6. Cyclodextrin glycosyltransferase, domain E [49215] (5 species)

   1. Species Bacillus circulans, different strains [TaxId:1397] [49216] (29 PDB entries)

   2. Species Bacillus sp., strain 1011 [TaxId:1409] [49219] (4 PDB entries)

   3. Species Bacillus stearothermophilus [TaxId:1422] [49217] (1 PDB entry)

   4. Species Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId:1422] [49218] (2 PDB entries)

   5. Species Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId:33950] [49220] (2 PDB entries)

7. Envelope glycoprotein, domain III (C-terminal) [49213] (1 species)

   • Species Tick-borne encephalitis virus [TaxId:11084] [49214] (1 PDB entry)

8. F-actin cross-linking gelation factor (ABP-120), one repeat (ROD 4) [49239] (1 species)

   • Species Slime mold (Dictyostelium discoideum), different domains [49240] (2 PDB entries)

9. Galactose oxidase, C-terminal domain [49209] (2 species)

   1. Species Dactylium dendroides [TaxId:5132] [49210] (3 PDB entries)

   2. Species Fungi (Fusarium spp) [69164] (1 PDB entry)

10. Gingipain R (RgpB), C-terminal domain [49261] (1 species)

    • Species Porphyromonas gingivalis [TaxId:837] [49262] (1 PDB entry)

11. Glycosyltrehalose trehalohydrolase, N-terminal domain [49224] (1 species)

    • Species Archaeon Sulfolobus solfataricus, km1 [TaxId:2287] [49225] (2 PDB entries)

12. Hemocyanin, C-terminal domain [49228] (2 species)

    1. Species Horseshoe crab (Limulus polyphemus) [TaxId:6850] [49229] (4 PDB entries)

    2. Species Spiny lobster (Panulirus interruptus) [TaxId:6735] [49230] (7 PDB entries)

13. Hyaluronate lyase precatalytic domain [69167] (1 species)

    • Species Streptococcus agalactiae [TaxId:1311] [69168] (2 PDB entries)

14. Isoamylase, N-terminal domain [49226] (1 species)

    • Species Pseudomonas amyloderamosa [TaxId:32043] [49227] (1 PDB entry)

15. Major mite allergen [49256] (2 species)

    1. Species House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId:6954] [49257] (2 PDB entries)

    2. Species House-dust mite (Dermatophagoides pteronyssinus), Der p 2 [TaxId:6956] [49258] (1 PDB entry)

16. Maltogenic amylase, N-terminal domain [49221] (2 species)

    1. Species Thermoactinomyces vulgaris, TVAII [TaxId:2026] [49223] (4 PDB entries)

    2. Species Thermus sp. [TaxId:275] [49222] (1 PDB entry)

17. p50 subunit of NF-kappa B transcription factor, C-terminal domain [49248] (2 species)

    1. Species Human (Homo sapiens) [TaxId:9606] [49249] (2 PDB entries)

    2. Species Mouse (Mus musculus) [TaxId:10090] [49250] (4 PDB entries)

18. p52 subunit of NF-kappa B (NFKB), C-terminal domain [49251] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [49252] (1 PDB entry)

19. p65 subunit of NF-kappa B (NFKB), C-terminal domain [49253] (2 species)

    1. Species Human (Homo sapiens) [TaxId:9606] [49255] (1 PDB entry)

    2. Species Mouse (Mus musculus) [TaxId:10090] [49254] (5 PDB entries)

20. Rho GDP-dissociation inhibitor 1, RhoGDI [49241] (2 species)

    1. Species Cow (Bos taurus) [TaxId:9913] [49243] (3 PDB entries)

    2. Species Human (Homo sapiens) [TaxId:9606] [49242] (8 PDB entries)

21. Sialidase, "linker" domain [49237] (1 species)

    • Species Micromonospora viridifaciens [TaxId:1881] [49238] (2 PDB entries)

22. Sulfite oxidase, C-terminal domain [49259] (1 species)

    • Species Chicken (Gallus gallus) [TaxId:9031] [49260] (1 PDB entry)

23. Transcription factor NFATC, C-terminal domain [49246] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [49247] (1 PDB entry)

24. Transcription factor TONEBP, C-terminal domain [69170] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [69171] (1 PDB entry)

25. Transglutaminase N-terminal domain [49235] (2 species)

    1. Species Human (Homo sapiens) [TaxId:9606] [49236] (7 PDB entries)

    2. Species Red sea bream (Chrysophrys major) [TaxId:143350] [63667] (1 PDB entry)

More info for Family b.1.1.5: E set domains

Timeline for Family b.1.1.5: E set domains:

• Family b.1.1.5: E set domains first appeared (with stable ids) in SCOP 1.55
  
• Family b.1.1.5: E set domains appears in SCOP 1.57
  
• Family b.1.1.5: E set domains last appears in SCOP 1.61