SCOPe 2.05: Protein: CD4 C2-set domains

Lineage for Protein: CD4 C2-set domains

Root: SCOPe 2.05
Class b: All beta proteins [48724] (176 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (5 families)
Family b.1.1.3: C2 set domains [49142] (8 proteins)
Protein CD4 C2-set domains [49149] (2 species)

Species:

Human (Homo sapiens) [TaxId:9606] [49150] (31 PDB entries)
1. Domain for 1cdh:
  - Domain d1cdha2: 1cdh A:98-178 [21661]
    Other proteins in same PDB: d1cdha1
    domain 2
2. Domain for 1cdi:
  - Domain d1cdia2: 1cdi A:98-178 [21666]
    Other proteins in same PDB: d1cdia1
    domain 2
3. Domain for 1cdj:
  - Domain d1cdja2: 1cdj A:98-178 [21664]
    Other proteins in same PDB: d1cdja1
    domain 2
4. Domain for 1cdu:
  - Domain d1cdua2: 1cdu A:98-178 [21662]
    Other proteins in same PDB: d1cdua1
    domain 2
    mutant
5. Domain for 1cdy:
  - Domain d1cdya2: 1cdy A:98-178 [21658]
    Other proteins in same PDB: d1cdya1
    domain 2
    mutant
6. Domain for 1g9m:
  - Domain d1g9mc2: 1g9m C:98-181 [21660]
    Other proteins in same PDB: d1g9mc1, d1g9mg_, d1g9mh1, d1g9mh2, d1g9ml1, d1g9ml2
    domain 2
    complexed with ipa, nag, ndg
7. Domain for 1g9n:
  - Domain d1g9nc2: 1g9n C:98-181 [21665]
    Other proteins in same PDB: d1g9nc1, d1g9ng_, d1g9nh1, d1g9nh2, d1g9nl1, d1g9nl2
    domain 2
    complexed with nag, ndg
8. Domain for 1gc1:
  - Domain d1gc1c2: 1gc1 C:98-181 [21663]
    Other proteins in same PDB: d1gc1c1, d1gc1g_, d1gc1h1, d1gc1h2, d1gc1l1, d1gc1l2
    domain 2
    complexed with nag
9. Domain for 1jl4:
  - Domain d1jl4d2: 1jl4 D:98-178 [63162]
    Other proteins in same PDB: d1jl4a1, d1jl4a2, d1jl4b1, d1jl4b2, d1jl4d1
    domain 2
10. Domain for 1rzj:
  - Domain d1rzjc2: 1rzj C:98-181 [98199]
    Other proteins in same PDB: d1rzjc1, d1rzjg_, d1rzjh1, d1rzjh2, d1rzjl1, d1rzjl2
    domain 2
    complexed with ipa, nag, ndg
11. Domain for 1rzk:
  - Domain d1rzkc2: 1rzk C:98-181 [98206]
    Other proteins in same PDB: d1rzkc1, d1rzkg_, d1rzkh1, d1rzkh2, d1rzkl1, d1rzkl2
    domain 2
    complexed with nag, ndg
12. Domains for 1wio:
  1. Domain d1wioa3: 1wio A:98-178 [21667]
    Other proteins in same PDB: d1wioa1, d1wioa2, d1wiob1, d1wiob2
    domains 2 and 4
  2. Domain d1wioa4: 1wio A:292-363 [21668]
    Other proteins in same PDB: d1wioa1, d1wioa2, d1wiob1, d1wiob2
    domains 2 and 4
  3. Domain d1wiob3: 1wio B:98-178 [21669]
    Other proteins in same PDB: d1wioa1, d1wioa2, d1wiob1, d1wiob2
    domains 2 and 4
  4. Domain d1wiob4: 1wio B:292-363 [21670]
    Other proteins in same PDB: d1wioa1, d1wioa2, d1wiob1, d1wiob2
    domains 2 and 4
13. Domains for 1wip:
  1. Domain d1wipa3: 1wip A:98-178 [21671]
    Other proteins in same PDB: d1wipa1, d1wipa2, d1wipb1, d1wipb2
    domains 2 and 4
  2. Domain d1wipa4: 1wip A:292-363 [21672]
    Other proteins in same PDB: d1wipa1, d1wipa2, d1wipb1, d1wipb2
    domains 2 and 4
  3. Domain d1wipb3: 1wip B:98-178 [21673]
    Other proteins in same PDB: d1wipa1, d1wipa2, d1wipb1, d1wipb2
    domains 2 and 4
  4. Domain d1wipb4: 1wip B:292-363 [21674]
    Other proteins in same PDB: d1wipa1, d1wipa2, d1wipb1, d1wipb2
    domains 2 and 4
14. Domains for 1wiq:
  1. Domain d1wiqa3: 1wiq A:98-178 [21675]
    Other proteins in same PDB: d1wiqa1, d1wiqa2, d1wiqb1, d1wiqb2
    domains 2 and 4
  2. Domain d1wiqa4: 1wiq A:292-363 [21676]
    Other proteins in same PDB: d1wiqa1, d1wiqa2, d1wiqb1, d1wiqb2
    domains 2 and 4
  3. Domain d1wiqb3: 1wiq B:98-178 [21677]
    Other proteins in same PDB: d1wiqa1, d1wiqa2, d1wiqb1, d1wiqb2
    domains 2 and 4
  4. Domain d1wiqb4: 1wiq B:292-363 [21678]
    Other proteins in same PDB: d1wiqa1, d1wiqa2, d1wiqb1, d1wiqb2
    domains 2 and 4
15. Domain for 2b4c:
  - Domain d2b4cc2: 2b4c C:98-175 [127821]
    Other proteins in same PDB: d2b4cc1, d2b4cg1, d2b4ch1, d2b4ch2, d2b4cl1, d2b4cl2
    automatically matched to d1g9mc2
    complexed with nag, ndg, so4, xyl
16. Domain for 2nxy:
  - Domain d2nxyb2: 2nxy B:1098-1181 [138746]
    Other proteins in same PDB: d2nxya1, d2nxyb1, d2nxyc1, d2nxyc2, d2nxyd1, d2nxyd2
    complexed with hez, nag, trs
17. Domain for 2nxz:
  - Domain d2nxzb2: 2nxz B:1098-1181 [138752]
    Other proteins in same PDB: d2nxza1, d2nxzb1, d2nxzc1, d2nxzc2, d2nxzd1, d2nxzd2
    complexed with edo, hez, ipa, nag, suc
18. Domain for 2ny0:
  - Domain d2ny0b2: 2ny0 B:1098-1181 [138759]
    Other proteins in same PDB: d2ny0a1, d2ny0b1, d2ny0c1, d2ny0c2, d2ny0d1, d2ny0d2
    complexed with hez, nag
19. Domain for 2ny1:
  - Domain d2ny1b2: 2ny1 B:1098-1181 [138765]
    Other proteins in same PDB: d2ny1a1, d2ny1b1, d2ny1c1, d2ny1c2, d2ny1d1, d2ny1d2
    complexed with nag, suc
20. Domain for 2ny2:
  - Domain d2ny2b2: 2ny2 B:1098-1181 [138771]
    Other proteins in same PDB: d2ny2a1, d2ny2b1, d2ny2c1, d2ny2c2, d2ny2d1, d2ny2d2
    complexed with edo, hez, nag, suc
21. Domain for 2ny3:
  - Domain d2ny3b2: 2ny3 B:1098-1181 [138777]
    Other proteins in same PDB: d2ny3a1, d2ny3b1, d2ny3c1, d2ny3c2, d2ny3d1, d2ny3d2
    complexed with nag, suc
22. Domain for 2ny4:
  - Domain d2ny4b2: 2ny4 B:1098-1181 [138783]
    Other proteins in same PDB: d2ny4a1, d2ny4b1, d2ny4c1, d2ny4c2, d2ny4d1, d2ny4d2
    complexed with hez, nag, suc
23. Domain for 2ny5:
  - Domain d2ny5c2: 2ny5 C:1098-1181 [138789]
    Other proteins in same PDB: d2ny5c1, d2ny5g1, d2ny5h1, d2ny5h2, d2ny5l1, d2ny5l2
    complexed with nag, suc
24. Domain for 2ny6:
  - Domain d2ny6b2: 2ny6 B:1098-1181 [138795]
    Other proteins in same PDB: d2ny6a1, d2ny6b1, d2ny6c1, d2ny6c2, d2ny6d1, d2ny6d2
    complexed with nag, suc
25. Domains for 2qad:
  1. Domain d2qadb2: 2qad B:98-178 [150204]
    Other proteins in same PDB: d2qadb1, d2qadd1, d2qadd2, d2qadf1, d2qadh1, d2qadh2
    automatically matched to d1g9mc2
    complexed with edo, mla, nag
  2. Domain d2qadf2: 2qad F:98-178 [150208]
    Other proteins in same PDB: d2qadb1, d2qadd1, d2qadd2, d2qadf1, d2qadh1, d2qadh2
    automatically matched to d1g9mc2
    complexed with edo, mla, nag
26. Domain for 3cd4:
  - Domain d3cd4a2: 3cd4 A:98-178 [21659]
    Other proteins in same PDB: d3cd4a1
    domain 2
27. Domains for 3jwd:
  1. Domain d3jwdc2: 3jwd C:1098-1183 [232650]
    Other proteins in same PDB: d3jwdc1, d3jwdd1, d3jwdl1, d3jwdl2, d3jwdo1, d3jwdo2
    automated match to d2nxyb2
    complexed with gol, nag
  2. Domain d3jwdd2: 3jwd D:1098-1183 [232651]
    Other proteins in same PDB: d3jwdc1, d3jwdd1, d3jwdl1, d3jwdl2, d3jwdo1, d3jwdo2
    automated match to d2nxyb2
    complexed with gol, nag
28. Domain for 3o2d:
  - Domain d3o2da2: 3o2d A:98-178 [233060]
    Other proteins in same PDB: d3o2da1, d3o2dl1, d3o2dl2
    automated match to d1cdya2
29. Domain for 4h8w:
  - Domain d4h8wc2: 4h8w C:98-176 [238360]
    Other proteins in same PDB: d4h8wc1, d4h8wl1, d4h8wl2
    automated match to d1g9mc2
    complexed with gol, mrd, nag
30. Domain for 4jm2:
  - Domain d4jm2f2: 4jm2 F:98-175 [252986]
    Other proteins in same PDB: d4jm2b1, d4jm2b2, d4jm2c1, d4jm2c2, d4jm2e_, d4jm2f1
    automated match to d3o2da2
    complexed with nag, pg4
31. Domain for 4p9h:
  - Domain d4p9hc2: 4p9h C:98-177 [257450]
    Other proteins in same PDB: d4p9hc1, d4p9hl1, d4p9hl2
    automated match to d3o2da2
    complexed with bam, epe, nag
Rat (Rattus rattus) [TaxId:10117] [49151] (1 PDB entry)
- Domain for 1cid:
  - Domain d1cida2: 1cid A:106-177 [21679]
    Other proteins in same PDB: d1cida1
    domain 4
    complexed with so4

More info for Protein CD4 C2-set domains from b.1.1.3: C2 set domains

Timeline for Protein CD4 C2-set domains from b.1.1.3: C2 set domains:

Protein CD4 C2-set domains from b.1.1.3: C2 set domains first appeared (with stable ids) in SCOP 1.55, called Protein CD4 from b.1.1.3: C2 set domains
Protein CD4 C2-set domains from b.1.1.3: C2 set domains appears in SCOPe 2.04
Protein CD4 C2-set domains from b.1.1.3: C2 set domains appears in SCOPe 2.06
Protein CD4 C2-set domains from b.1.1.3: C2 set domains appears in the current release, SCOPe 2.08