Lineage for Family b.1.1.1: V set domains (antibody variable domain-like)

  1. Root: SCOP 1.57
  2. 51639Class b: All beta proteins [48724] (104 folds)
  3. 51640Fold b.1: Immunoglobulin-like beta-sandwich [48725] (14 superfamilies)
  4. 51641Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 51642Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (14 proteins)

Proteins:

  1. 51643CD2, first domain [48740] (2 species)
    1. 51644Species Human (Homo sapiens) [TaxId:9606] [48741] (4 PDB entries)
    2. 51650Species Rat (Rattus norvegicus) [TaxId:10116] [48742] (5 PDB entries)
  2. 51663CD2-binding domain of CD58, N-terminal domain [48743] (1 species)
  3. 51669CD8 [48734] (2 species)
    1. 51670Species Human (Homo sapiens) [TaxId:9606] [48735] (2 PDB entries)
    2. 51674Species Mouse (Mus musculus) [TaxId:10090] [48736] (1 PDB entry)
  4. 51679CD80, N-terminal domain [48745] (1 species)
  5. 51684CD86 (b7-2), N-terminal domain [63635] (1 species)
  6. 51688Coxsackie virus and adenovirus receptor (Car), domain 1 [48730] (1 species)
  7. 51695HSV glycoprotein D [63637] (1 species)
  8. 51698Immunoglobulin (variable domains of L and H chains) [48749] (195 species)
    1. 51699Species Anti bet v1 Fab BV16, (mouse), kappa L chain [48902] (1 PDB entry)
    2. 51708Species Anti-ampicillin scFv, (mouse), kappa L chain [63645] (3 PDB entries)
    3. 51719Species Anti-C60 fullerene Fab, (mouse), kappa L chain [48905] (1 PDB entry)
    4. 51722Species Anti-carbohydrate Fab S-20-4 (mouse), lambda L chain [48898] (3 PDB entries)
    5. 51729Species Anti-carcinoembryonic scFv MFE-23, (mouse), kappa L chain [48908] (1 PDB entry)
    6. 51732Species Anti-cytochrome c Fab E8, (mouse), kappa L chain [48875] (3 PDB entries)
    7. 51739Species Anti-dansyl Fv, (mouse), kappa L chain [48882] (2 PDB entries)
    8. 51744Species Anti-E-selectin Fab (mouse), kappa L chain [48864] (1 PDB entry)
    9. 51747Species Anti-FMDV Fab 4C4, (mouse), kappa L chain [48890] (1 PDB entry)
    10. 51750Species Anti-gp120 (HIV-1) Fab 58.2, (mouse), kappa L chain [48873] (3 PDB entries)
    11. 51757Species Anti-HCG Fab 3A2, (mouse), kappa L chain [48876] (1 PDB entry)
    12. 51760Species Anti-HIV Fab G3-519, (mouse), kappa L chain [63642] (1 PDB entry)
    13. 51763Species Anti-HIV Fv 0.5B, (mouse), kappa L chain [48897] (1 PDB entry)
    14. 51766Species Anti-idiotope (D1.3) Fab E225, (mouse), kappa L chain [48785] (1 PDB entry)
    15. 51769Species Anti-IL2 Fab LNKB-2, (mouse), kappa L chain [63643] (2 PDB entries)
    16. 51774Species Anti-integrin Fab OPG2 (mouse), kappa L chain [48805] (2 PDB entries)
    17. 51779Species Anti-lysozyme Fab HYHEL-63, (mouse), kappa L chain [48889] (3 PDB entries)
    18. 51788Species Anti-lysozyme scFv 1F9, (mouse), kappa L chain [48907] (1 PDB entry)
    19. 51793Species Anti-p-glycoprotein Fab MRK-16 (mouse), kappa L chain [48871] (1 PDB entry)
    20. 51798Species Anti-p24 (HIV-1) Fab CB 4-1 (mouse), kappa L chain [48872] (8 PDB entries)
    21. 51815Species Anti-photoproduct Fab 64M-2, (mouse), kappa L chain [48912] (1 PDB entry)
    22. 51818Species Anti-Pres2 Fab F124, (mouse), kappa L chain [48899] (1 PDB entry)
    23. 51823Species Anti-prion Fab 3F4, (mouse), kappa L chain [48891] (2 PDB entries)
    24. 51828Species Anti-sweetener Fab NC10.14, (mouse), lamba L chain [48904] (1 PDB entry)
    25. 51833Species Anti-TGFalpha Fab TAB2, (mouse), kappa L chain [63644] (2 PDB entries)
    26. 51840Species Anti-[gonadotropin alpha subunit] Fv, kappa L chain [48892] (1 PDB entry)
    27. 51843Species Anti-[gonadotropin beta subunit] Fv, kappa L chain [48893] (1 PDB entry)
    28. 51846Species Antibody to CAMPATH-1H humanized fab, kappa L chain [48869] (1 PDB entry)
    29. 51849Species Anticancer Fv B1 (mouse) [48851] (1 PDB entry)
    30. 51852Species Bactericidal Fab (mouse), kappa L chain [48826] (1 PDB entry)
    31. 51855Species Bactericidal Fab MN12H2, (mouse), kappa L chain [48874] (2 PDB entries)
    32. 51860Species Bence-Jones kappa L chain DEL (human) [48932] (1 PDB entry)
    33. 51863Species Bence-Jones lambda L chain dimer CLE (human) [48926] (1 PDB entry)
    34. 51866Species Bence-Jones lambda L chain dimer LOC (human) [48922] (3 PDB entries)
    35. 51873Species Bence-Jones VL (kappa) dimer BRE (human) [48924] (3 PDB entries)
    36. 51886Species Bence-Jones VL (kappa) dimer REI (human) [48920] (3 PDB entries)
    37. 51892Species Bence-Jones VL (kappa) dimer WAT (human) [48923] (1 PDB entry)
    38. 51895Species Bence-Jones VL (kappa) domain LEN (human) [48925] (9 PDB entries)
    39. 51909Species Bence-Jones VL (lambda) dimer JTO (human) [48927] (1 PDB entry)
    40. 51912Species Bence-Jones VL (lambda) dimer RHE (human) [48921] (1 PDB entry)
    41. 51914Species Bence-Jones VL (lambda) dimer WIL (human) [48928] (1 PDB entry)
    42. 51917Species Blue fluorescent Fab 19G2, (mouse), kappa L chain [48906] (1 PDB entry)
    43. 51922Species Camel (Camelus dromedarius), anti-lysozyme antibody [48914] (1 PDB entry)
    44. 51925Species Camel (Camelus dromedarius), anti-RNase A antibody [48915] (1 PDB entry)
    45. 51930Species Camel (Camelus dromedarius), antibody cab-ca05 [48916] (2 PDB entries)
    46. 51934Species CAMPATH-1G igg2b monoclonal fab (rat), kappa L chain [48867] (1 PDB entry)
    47. 51943Species Catalytic Fab 19A4 (mouse), kappa L chain [48880] (1 PDB entry)
    48. 51946Species Catalytic Fab 33F12 (mouse), kappa L chain [48865] (1 PDB entry)
    49. 51949Species Catalytic Fab 4B2, (mouse), kappa L chain [48900] (1 PDB entry)
    50. 51954Species Catalytic Fab 5C8 (mouse), kappa L chain [48863] (3 PDB entries)
    51. 51961Species Catalytic Fab 7C8, (mouse), kappa L chain [48885] (1 PDB entry)
    52. 51966Species Decarboxylase catalytic Fab 21D8, chimeric (mouse V domains/human C1 domains) [48903] (2 PDB entries)
    53. 51971Species Diels alder catalytic Fab (mouse), kappa L chain [48847] (2 PDB entries)
    54. 51980Species Diels alder catalytic Fab 13G5 (mouse), kappa L chain [48849] (1 PDB entry)
    55. 51983Species Diels alder catalytic Fab 1E9 (mouse), kappa L chain [48848] (1 PDB entry)
    56. 51986Species Fab 13B5 against HIV-1 capsid protein p24, (mouse), kappa L chain [48909] (2 PDB entries)
    57. 51991Species Fab 1583, against an epitope of gp41 of HIV-1, (mouse), kappa L chain [48818] (1 PDB entry)
    58. 51994Species Fab 1696, (mouse), kappa L chain [48888] (1 PDB entry)
    59. 51997Species Fab 17-Ia (mouse), kappa L chain [48791] (2 PDB entries)
    60. 52002Species Fab 17/9 (mouse), kappa L chain [48757] (4 PDB entries)
    61. 52015Species Fab 17E8 (mouse), kappa L chain [48793] (1 PDB entry)
    62. 52018Species Fab 184.1 (mouse), kappa L chain [48820] (1 PDB entry)
    63. 52021Species Fab 198 against actylcholine receptor, (rat) [63648] (1 PDB entry)
    64. 52026Species Fab 1F7 (mouse), kappa L chain [48782] (1 PDB entry)
    65. 52029Species Fab 25.3 (mouse), kappa L chain [48825] (1 PDB entry)
    66. 52034Species Fab 26-10 (mouse), kappa L chain [48761] (4 PDB entries)
    67. 52043Species Fab 26/9 (mouse), kappa L chain [48783] (1 PDB entry)
    68. 52046Species Fab 28 against HIV-1 RT (mouse), kappa L chain [48857] (3 PDB entries)
    69. 52053Species Fab 28B4 (mouse), kappa L chain [48819] (2 PDB entries)
    70. 52058Species Fab 29G11 (mouse), kappa L chain [48859] (1 PDB entry)
    71. 52061Species Fab 2E8 (mouse), kappa L chain [48855] (1 PDB entry)
    72. 52066Species Fab 2H1 (mouse), kappa L chain [48837] (1 PDB entry)
    73. 52069Species Fab 32C2 against P450-arom, (mouse), kappa L chain [48894] (1 PDB entry)
    74. 52072Species Fab 36-71 (mouse), kappa L chain [48779] (1 PDB entry)
    75. 52075Species Fab 3D6 (human), kappa L chain [48759] (1 PDB entry)
    76. 52078Species Fab 4-4-20 (mouse), kappa L chain [48778] (2 PDB entries)
    77. 52083Species Fab 40-50 (mouse), kappa L chain [48802] (1 PDB entry)
    78. 52086Species Fab 409.5.3 (mouse), kappa L chain [48808] (2 PDB entries)
    79. 52093Species Fab 48G7 (mouse/human), kappa L chain [48810] (4 PDB entries)
    80. 52102Species Fab 4D5 (synthetic, humanised version), kappa L chain [48771] (3 PDB entries)
    81. 52115Species Fab 50.1 (mouse), kappa L chain [48772] (3 PDB entries)
    82. 52124Species Fab 59.1 (mouse), kappa L chain [48773] (2 PDB entries)
    83. 52129Species Fab 5G9 (mouse), kappa L chain [48843] (2 PDB entries)
    84. 52136Species Fab 6B5, (mouse), kappa L chain [48878] (1 PDB entry)
    85. 52141Species Fab 6D9 (mouse), kappa L chain [48833] (2 PDB entries)
    86. 52146Species Fab 730.1.4 (mouse), kappa L chain [48807] (1 PDB entry)
    87. 52149Species Fab 8F5 (mouse), kappa L chain [48755] (2 PDB entries)
    88. 52154Species Fab A5B7 (engineered human construct), kappa L chain [48823] (1 PDB entry)
    89. 52159Species Fab A5B7 (mouse), kappa L chain [48822] (1 PDB entry)
    90. 52162Species Fab A6 (mouse), kappa L chain [48844] (1 PDB entry)
    91. 52165Species Fab against a ganglioside (mouse), kappa L chain [48828] (1 PDB entry)
    92. 52168Species Fab against cytokyne receptor common beta chain domain 4, (mouse), kappa L chain [48911] (1 PDB entry)
    93. 52171Species Fab against the main immunogenic region of the human muscle acetylcholine receptor, (rat), kappa L chain [48886] (1 PDB entry)
    94. 52176Species Fab ANO2 (mouse), kappa L chain [48754] (1 PDB entry)
    95. 52179Species Fab anti-nitrophenol (mouse), lambda L chain [48813] (1 PDB entry)
    96. 52184Species Fab B13I2 (mouse), kappa L chain [48760] (2 PDB entries)
    97. 52191Species Fab B7-15A2 (human), lambda L chain [48838] (1 PDB entry)
    98. 52194Species Fab B72.3 (mouse/human chimera), kappa L chain [48756] (1 PDB entry)
    99. 52197Species Fab BO2C11 against the C2 domain of factor VIII, (human), kappa L chain [63647] (1 PDB entry)
    100. 52200Species Fab BV04-01 (mouse), kappa L chain [48776] (2 PDB entries)
    101. 52205Species Fab C3, neutralizing type 1 poliovirus, (mouse), kappa L chain [48797] (1 PDB entry)
    102. 52208Species Fab CBR96 (mouse/human), kappa L chain [48814] (2 PDB entries)
    103. 52213Species Fab Cha255 (mouse), lambda L chain [48765] (2 PDB entries)
    104. 52218Species Fab CHI621 (mouse), kappa L chain [48824] (1 PDB entry)
    105. 52221Species Fab CNJ206 (mouse), kappa L chain [48792] (2 PDB entries)
    106. 52244Species Fab CTM01 (human construct), kappa L chain [48842] (1 PDB entry)
    107. 52249Species Fab CTM01 (mouse), kappa L chain [48841] (1 PDB entry)
    108. 52252Species Fab D1.3 (mouse), kappa L chain [48784] (19 PDB entries)
    109. 52291Species Fab D2.3 (mouse), kappa L chain [48829] (4 PDB entries)
    110. 52300Species Fab D2.4 (mouse), kappa L chain [48830] (1 PDB entry)
    111. 52305Species Fab D2.5 (mouse), kappa L chain [48831] (4 PDB entries)
    112. 52314Species Fab D44.1 (mouse), kappa L chain [48803] (2 PDB entries)
    113. 52321Species Fab DB3 (mouse), kappa L chain [48758] (6 PDB entries)
    114. 52334Species Fab Desire-1 (mouse), kappa L chain [48846] (1 PDB entry)
    115. 52337Species Fab directed agains the musk odorant traseolide, (mouse), kappa L chain [48881] (1 PDB entry)
    116. 52340Species Fab F11.2.32 (mouse), kappa L chain [48834] (2 PDB entries)
    117. 52349Species Fab F9.13.7 (mouse), kappa L chain [48795] (1 PDB entry)
    118. 52354Species Fab GH1002 (mouse), kappa L chain [48817] (1 PDB entry)
    119. 52357Species Fab GNC92H2, (mouse/human chimera), kappa L chain [63646] (1 PDB entry)
    120. 52362Species Fab H52 (synthetic, humanised version), kappa L chain [48769] (2 PDB entries)
    121. 52367Species Fab H57 (hamster), lambda L chain [48836] (1 PDB entry)
    122. 52372Species Fab HC19 (mouse), lambda L chain [48780] (4 PDB entries)
    123. 52381Species Fab HGR-2 F6, (mouse), kappa L chain [48895] (1 PDB entry)
    124. 52384Species Fab HIL (human), lambda L chain [48752] (1 PDB entry)
    125. 52389Species Fab HyHEL-10 (mouse), kappa L chain [48788] (5 PDB entries)
    126. 52400Species Fab HyHEL-5 (mouse), kappa L chain [48787] (3 PDB entries)
    127. 52407Species Fab J539 (mouse), kappa L chain [48768] (1 PDB entry)
    128. 52410Species Fab JE142 (mouse), kappa L chain [48789] (1 PDB entry)
    129. 52413Species Fab Jel 103 (mouse), kappa L chain [48794] (4 PDB entries)
    130. 52422Species Fab Kau cold agglutinin (human) IgM, kappa L chain [48764] (2 PDB entries)
    131. 52431Species Fab KOL (human), lambda L chain [48767] (2 PDB entries)
    132. 52436Species Fab LA-2 (mouse), kappa L chain [48821] (1 PDB entry)
    133. 52441Species Fab M41 (artificial design) [48845] (1 PDB entry)
    134. 52446Species Fab Mab1-IA (mouse), kappa L chain [48852] (1 PDB entry)
    135. 52451Species Fab MAK33, (human), kappa L chain [48901] (1 PDB entry)
    136. 52454Species Fab MBR96 (mouse), kappa L chain [48815] (1 PDB entry)
    137. 52457Species Fab MCPC603 (human), kappa L chain [48770] (4 PDB entries)
    138. 52464Species Fab MN14C11.6 (mouse), kappa L chain [48827] (1 PDB entry)
    139. 52467Species Fab MoPC21 (mouse), kappa L chain [48801] (1 PDB entry)
    140. 52470Species Fab N10 (mouse), kappa L chain [48806] (1 PDB entry)
    141. 52473Species Fab N1G9 (mouse), lambda L chain [48811] (2 PDB entries)
    142. 52478Species Fab NC10 (mouse), kappa L chain [48804] (4 PDB entries)
    143. 52489Species Fab NC41 (mouse), kappa L chain [48790] (4 PDB entries)
    144. 52498Species Fab NEW (human), lambda L chain [48753] (1 PDB entry)
    145. 52501Species Fab NMC-4 (mouse), kappa L chain [48860] (2 PDB entries)
    146. 52506Species Fab of human IgM RF 2A2 [48896] (2 PDB entries)
    147. 52517Species Fab R19.9 (mouse), kappa L chain [48766] (2 PDB entries)
    148. 52522Species Fab R24, (mouse), kappa L chain [48884] (2 PDB entries)
    149. 52529Species Fab R6.5 (mouse), kappa L chain [48796] (1 PDB entry)
    150. 52532Species Fab RU5, (mouse), kappa L chain [63640] (1 PDB entry)
    151. 52539Species Fab SE155-4 (mouse), lambda L chain [48775] (5 PDB entries)
    152. 52550Species Fab TE33 (mouse), kappa L chain [48777] (1 PDB entry)
    153. 52553Species Fab TP7 (mouse), kappa L chain [48850] (2 PDB entries)
    154. 52558Species Fab TR1.9 (mouse/human), kappa L chain [48812] (1 PDB entry)
    155. 52561Species Fab Yst9.1 (mouse), kappa L chain [48774] (1 PDB entry)
    156. 52564Species Fab, anti-cyclosporin A, (mouse), kappa L chain [48798] (1 PDB entry)
    157. 52567Species Fab, anti-sweetener (mouse), kappa L chain [48781] (2 PDB entries)
    158. 52572Species Fv 4155 (mouse), kappa L chain [48832] (3 PDB entries)
    159. 52579Species Fv against Paracoccus denitrificans cytochrome c oxidase (mouse), kappa L chain [48840] (2 PDB entries)
    160. 52584Species Fv against Rieske protein from the yeast cytochrome bc1 complex, (mouse), kappa L chain [63641] (1 PDB entry)
    161. 52587Species Fv B1-8 (mouse), lambda L chain [48853] (3 PDB entries)
    162. 52598Species Fv D11.15 (mouse), kappa L chain [48786] (1 PDB entry)
    163. 52601Species Fv E5.2 (mouse), kappa L chain [48816] (1 PDB entry)
    164. 52604Species Fv M3C65, (human), lambda L chain [48910] (1 PDB entry)
    165. 52607Species Fv MEZ (human) IgM, kappa L chain [48763] (1 PDB entry)
    166. 52610Species Fv POT (human) IgM, kappa L chain [48762] (1 PDB entry)
    167. 52613Species Heterologous L chain dimer MCG-WEIR hybrid (human) [48931] (1 PDB entry)
    168. 52616Species HIV-1 neutralizing Fab 17B (human), kappa L chain [48854] (3 PDB entries)
    169. 52623Species Humanized and chimeric anti-gamma-interferon Fab [48866] (2 PDB entries)
    170. 52628Species Humanized anti-lysozyme Fv HuLys11 (mouse), kappa L chain [48858] (2 PDB entries)
    171. 52637Species IgM rheumatoid factor Fab (human), lambda L chain [48856] (1 PDB entry)
    172. 52640Species Influenza virus hemagglutinin-neutralizing Fab (mouse), kappa L chain [48861] (1 PDB entry)
    173. 52643Species Influenza virus hemagglutinin-neutralizing Fab BH151 (mouse), kappa L chain [48862] (1 PDB entry)
    174. 52646Species Intact antibody (lambda) MCG (human) [48929] (1 PDB entry)
    175. 52649Species Intact IgG B12 antibody (human), kappa L chain [63639] (1 PDB entry)
    176. 52654Species Intact IgG1 antibody Mab61.1.3 (mouse), kappa L chain [48751] (1 PDB entry)
    177. 52659Species Intact IgG2a antibody Mab231 (mouse), kappa L chain [48750] (1 PDB entry)
    178. 52664Species Kappa-4 VL REC (human) [63650] (1 PDB entry)
    179. 52667Species Lambda L chain dimer MCG (human) [48930] (18 PDB entries)
    180. 52704Species Llama (Lama glama), anti-gonadotropin alpha subunit VH domain [48917] (1 PDB entry)
    181. 52706Species Llama (Lama glama), anti-RR6 VH domain [48918] (1 PDB entry)
    182. 52708Species Llama (Lama glama), the dye RR1-binding VHh domain [63649] (2 PDB entries)
    183. 52712Species Mature metal chelatase catalytic Fab, (human), kappa L chain [48879] (1 PDB entry)
    184. 52717Species Oxy-cope catalytic Fab az-28, chimeric (mouse V domains/human C1 domains) [48839] (4 PDB entries)
    185. 52730Species Polysialic acid-binding Fab (mouse), kappa L chain [48809] (1 PDB entry)
    186. 52733Species scFv C219, (mouse sequence-based), kappa L chain [48835] (2 PDB entries)
    187. 52742Species scFv dimer (L5MK16 diabody), based on: (mouse), kappa L chain [48799] (1 PDB entry)
    188. 52751Species scFv MAB198, (rat), kappa L chain [48887] (1 PDB entry)
    189. 52754Species scFv trivalent antibody, based on: (mouse), kappa L chain [48800] (1 PDB entry)
    190. 52759Species Sterolytic and amidolytic Fv 43c9, (mouse), kappa L chain [48883] (2 PDB entries)
    191. 52776Species Therapeutic CAMPATH-1H humanized fab (rat), kappa L chain [48868] (1 PDB entry)
    192. 52779Species Tumor-specific Fab SM3, (mouse), lambda L chain [48877] (1 PDB entry)
    193. 52782Species VEGF neutralizing Fab-12 (mouse), kappa L chain [48870] (2 PDB entries)
    194. 52791Species VH-P8 domain (human), camelized monomer(mouse) [48913] (1 PDB entry)
    195. 52793Species VL domain (kappa) of antibody M29B, dimer synthetic [48919] (1 PDB entry)
  9. 52796Immunoreceptor CTLA-4 (CD152), N-terminal fragment [48939] (2 species)
    1. 52797Species Human (Homo sapiens) [TaxId:9606] [48940] (3 PDB entries)
    2. 52803Species Mouse (Mus musculus) [TaxId:10090] [48941] (1 PDB entry)
  10. 52808Junction adhesion molecule, JAM, N-terminal domain [48747] (1 species)
  11. 52811Myelin membrane adhesion molecule P0 [48728] (1 species)
  12. 52814N-terminal domain of CD4 [48737] (2 species)
    1. 52815Species Human (Homo sapiens) [TaxId:9606] [48738] (13 PDB entries)
    2. 52838Species Rat (Rattus rattus) [TaxId:10117] [48739] (1 PDB entry)
  13. 52840N-terminal domain of sialoadhesin [48732] (1 species)
  14. 52846T-cell antigen receptor [48933] (6 species)
    1. 52847Species Human (Homo sapiens), alpha-chain [TaxId:9606] [48935] (6 PDB entries)
    2. 52854Species Human (Homo sapiens), beta-chain [TaxId:9606] [48937] (6 PDB entries)
    3. 52861Species Human (Homo sapiens), delta-chain [TaxId:9606] [48938] (2 PDB entries)
    4. 52868Species Human (Homo sapiens), gamma-chain [TaxId:9606] [63651] (1 PDB entry)
    5. 52873Species Mouse (Mus musculus), alpha-chain [TaxId:10090] [48934] (11 PDB entries)
    6. 52894Species Mouse (Mus musculus), beta-chain [TaxId:10090] [48936] (11 PDB entries)

More info for Family b.1.1.1: V set domains (antibody variable domain-like)

Timeline for Family b.1.1.1: V set domains (antibody variable domain-like):