Lineage for Family b.1.1.1: V set domains (antibody variable domain-like)

  1. Root: SCOP 1.55
  2. 6992Class b: All beta proteins [48724] (93 folds)
  3. 6993Fold b.1: Immunoglobulin-like beta-sandwich [48725] (14 superfamilies)
  4. 6994Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 6995Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (12 proteins)

Proteins:

  1. 6996CD2, first domain [48740] (2 species)
    1. 6997Species Human (Homo sapiens) [TaxId:9606] [48741] (4 PDB entries)
    2. 7003Species Rat (Rattus norvegicus) [TaxId:10116] [48742] (5 PDB entries)
  2. 7016CD2-binding domain of CD58, first domain [48743] (1 species)
  3. 7022CD4 [48737] (2 species)
    1. 7023Species Human (Homo sapiens) [TaxId:9606] [48738] (12 PDB entries)
    2. 7045Species Rat (Rattus rattus) [TaxId:10117] [48739] (1 PDB entry)
  4. 7047CD8 [48734] (2 species)
    1. 7048Species Human (Homo sapiens) [TaxId:9606] [48735] (2 PDB entries)
    2. 7052Species Mouse (Mus musculus) [TaxId:10090] [48736] (1 PDB entry)
  5. 7057CD80, first domain [48745] (1 species)
  6. 7060Coxsackie virus and adenovirus receptor (Car), domain 1 [48730] (1 species)
  7. 7065Immunoglobulin (variable domains of L and H chains) [48749] (183 species)
    1. 7066Species Anti bet v1 Fab BV16, (mouse), kappa L chain [48902] (1 PDB entry)
    2. 7075Species Anti-C60 fullerene Fab, (mouse), kappa L chain [48905] (1 PDB entry)
    3. 7078Species Anti-carbohydrate Fab S-20-4 (mouse), lambda L chain [48898] (3 PDB entries)
    4. 7085Species Anti-carcinoembryonic scFv MFE-23, (mouse), kappa L chain [48908] (1 PDB entry)
    5. 7088Species Anti-cytochrome c Fab E8, (mouse), kappa L chain [48875] (3 PDB entries)
    6. 7095Species Anti-dansyl Fv, (mouse), kappa L chain [48882] (2 PDB entries)
    7. 7100Species Anti-E-selectin Fab (mouse), kappa L chain [48864] (1 PDB entry)
    8. 7103Species Anti-FMDV Fab 4C4, (mouse), kappa L chain [48890] (1 PDB entry)
    9. 7106Species Anti-gp120 (HIV-1) Fab 58.2, (mouse), kappa L chain [48873] (3 PDB entries)
    10. 7113Species Anti-HCG Fab 3A2, (mouse), kappa L chain [48876] (1 PDB entry)
    11. 7116Species Anti-HIV Fv 0.5B, (mouse), kappa L chain [48897] (1 PDB entry)
    12. 7119Species Anti-idiotope (D1.3) Fab E225, (mouse), kappa L chain [48785] (1 PDB entry)
    13. 7122Species Anti-integrin Fab OPG2 (mouse), kappa L chain [48805] (2 PDB entries)
    14. 7127Species Anti-lysozyme Fab HYHEL-63, (mouse), kappa L chain [48889] (3 PDB entries)
    15. 7136Species Anti-lysozyme scFv 1F9, (mouse), kappa L chain [48907] (1 PDB entry)
    16. 7141Species Anti-p-glycoprotein Fab MRK-16 (mouse), kappa L chain [48871] (1 PDB entry)
    17. 7146Species Anti-p24 (HIV-1) Fab CB 4-1 (mouse), kappa L chain [48872] (8 PDB entries)
    18. 7163Species Anti-photoproduct Fab 64M-2, (mouse), kappa L chain [48912] (1 PDB entry)
    19. 7166Species Anti-Pres2 Fab F124, (mouse), kappa L chain [48899] (1 PDB entry)
    20. 7171Species Anti-prion Fab 3F4, (mouse), kappa L chain [48891] (2 PDB entries)
    21. 7176Species Anti-sweetener Fab NC10.14, (mouse), lamba L chain [48904] (1 PDB entry)
    22. 7181Species Anti-[gonadotropin alpha subunit] Fv, kappa L chain [48892] (1 PDB entry)
    23. 7184Species Anti-[gonadotropin beta subunit] Fv, kappa L chain [48893] (1 PDB entry)
    24. 7187Species Antibody to CAMPATH-1H humanized fab, kappa L chain [48869] (1 PDB entry)
    25. 7190Species Anticancer Fv B1 (mouse) [48851] (1 PDB entry)
    26. 7193Species Bactericidal Fab (mouse), kappa L chain [48826] (1 PDB entry)
    27. 7196Species Bactericidal Fab MN12H2, (mouse), kappa L chain [48874] (2 PDB entries)
    28. 7201Species Bence-Jones kappa L chain DEL (human) [48932] (1 PDB entry)
    29. 7204Species Bence-Jones lambda L chain dimer CLE (human) [48926] (1 PDB entry)
    30. 7207Species Bence-Jones lambda L chain dimer LOC (human) [48922] (3 PDB entries)
    31. 7214Species Bence-Jones VL (kappa) dimer BRE (human) [48924] (3 PDB entries)
    32. 7227Species Bence-Jones VL (kappa) dimer REI (human) [48920] (3 PDB entries)
    33. 7233Species Bence-Jones VL (kappa) dimer WAT (human) [48923] (1 PDB entry)
    34. 7236Species Bence-Jones VL (kappa) domain LEN (human) [48925] (9 PDB entries)
    35. 7250Species Bence-Jones VL (lambda) dimer JTO (human) [48927] (1 PDB entry)
    36. 7253Species Bence-Jones VL (lambda) dimer RHE (human) [48921] (1 PDB entry)
    37. 7255Species Bence-Jones VL (lambda) dimer WIL (human) [48928] (1 PDB entry)
    38. 7258Species Blue fluorescent Fab 19G2, (mouse), kappa L chain [48906] (1 PDB entry)
    39. 7263Species Camel (Camelus dromedarius), anti-lysozyme antibody [48914] (1 PDB entry)
    40. 7266Species Camel (Camelus dromedarius), anti-RNase A antibody [48915] (1 PDB entry)
    41. 7271Species Camel (Camelus dromedarius), antibody cab-ca05 [48916] (2 PDB entries)
    42. 7275Species CAMPATH-1G igg2b monoclonal fab (rat), kappa L chain [48867] (1 PDB entry)
    43. 7284Species Catalytic Fab 19A4 (mouse), kappa L chain [48880] (1 PDB entry)
    44. 7287Species Catalytic Fab 33F12 (mouse), kappa L chain [48865] (1 PDB entry)
    45. 7290Species Catalytic Fab 4B2, (mouse), kappa L chain [48900] (1 PDB entry)
    46. 7295Species Catalytic Fab 5C8 (mouse), kappa L chain [48863] (3 PDB entries)
    47. 7302Species Catalytic Fab 7C8, (mouse), kappa L chain [48885] (1 PDB entry)
    48. 7307Species Decarboxylase catalytic Fab 21D8, chimeric (mouse V domains/human C1 domains) [48903] (2 PDB entries)
    49. 7312Species Diels alder catalytic Fab (mouse), kappa L chain [48847] (2 PDB entries)
    50. 7321Species Diels alder catalytic Fab 13G5 (mouse), kappa L chain [48849] (1 PDB entry)
    51. 7324Species Diels alder catalytic Fab 1E9 (mouse), kappa L chain [48848] (1 PDB entry)
    52. 7327Species Fab 13B5 against HIV-1 capsid protein p24, (mouse), kappa L chain [48909] (2 PDB entries)
    53. 7332Species Fab 1583, against an epitope of gp41 of HIV-1, (mouse), kappa L chain [48818] (1 PDB entry)
    54. 7335Species Fab 1696, (mouse), kappa L chain [48888] (1 PDB entry)
    55. 7338Species Fab 17-Ia (mouse), kappa L chain [48791] (2 PDB entries)
    56. 7343Species Fab 17/9 (mouse), kappa L chain [48757] (4 PDB entries)
    57. 7356Species Fab 17E8 (mouse), kappa L chain [48793] (1 PDB entry)
    58. 7359Species Fab 184.1 (mouse), kappa L chain [48820] (1 PDB entry)
    59. 7362Species Fab 1F7 (mouse), kappa L chain [48782] (1 PDB entry)
    60. 7365Species Fab 25.3 (mouse), kappa L chain [48825] (1 PDB entry)
    61. 7370Species Fab 26-10 (mouse), kappa L chain [48761] (4 PDB entries)
    62. 7379Species Fab 26/9 (mouse), kappa L chain [48783] (1 PDB entry)
    63. 7382Species Fab 28 against HIV-1 RT (mouse), kappa L chain [48857] (2 PDB entries)
    64. 7387Species Fab 28B4 (mouse), kappa L chain [48819] (2 PDB entries)
    65. 7392Species Fab 29G11 (mouse), kappa L chain [48859] (1 PDB entry)
    66. 7395Species Fab 2E8 (mouse), kappa L chain [48855] (1 PDB entry)
    67. 7400Species Fab 2H1 (mouse), kappa L chain [48837] (1 PDB entry)
    68. 7403Species Fab 32C2 against P450-arom, (mouse), kappa L chain [48894] (1 PDB entry)
    69. 7406Species Fab 36-71 (mouse), kappa L chain [48779] (1 PDB entry)
    70. 7409Species Fab 3D6 (human), kappa L chain [48759] (1 PDB entry)
    71. 7412Species Fab 4-4-20 (mouse), kappa L chain [48778] (2 PDB entries)
    72. 7417Species Fab 40-50 (mouse), kappa L chain [48802] (1 PDB entry)
    73. 7420Species Fab 409.5.3 (mouse), kappa L chain [48808] (2 PDB entries)
    74. 7427Species Fab 48G7 (mouse/human), kappa L chain [48810] (4 PDB entries)
    75. 7436Species Fab 4D5 (synthetic, humanised version), kappa L chain [48771] (3 PDB entries)
    76. 7449Species Fab 50.1 (mouse), kappa L chain [48772] (3 PDB entries)
    77. 7458Species Fab 59.1 (mouse), kappa L chain [48773] (2 PDB entries)
    78. 7463Species Fab 5G9 (mouse), kappa L chain [48843] (2 PDB entries)
    79. 7470Species Fab 6B5, (mouse), kappa L chain [48878] (1 PDB entry)
    80. 7475Species Fab 6D9 (mouse), kappa L chain [48833] (2 PDB entries)
    81. 7480Species Fab 730.1.4 (mouse), kappa L chain [48807] (1 PDB entry)
    82. 7483Species Fab 8F5 (mouse), kappa L chain [48755] (2 PDB entries)
    83. 7488Species Fab A5B7 (engineered human construct), kappa L chain [48823] (1 PDB entry)
    84. 7493Species Fab A5B7 (mouse), kappa L chain [48822] (1 PDB entry)
    85. 7496Species Fab A6 (mouse), kappa L chain [48844] (1 PDB entry)
    86. 7499Species Fab against a ganglioside (mouse), kappa L chain [48828] (1 PDB entry)
    87. 7502Species Fab against cytokyne receptor common beta chain domain 4, (mouse), kappa L chain [48911] (1 PDB entry)
    88. 7505Species Fab against the main immunogenic region of the human muscle acetylcholine receptor, (rat), kappa L chain [48886] (1 PDB entry)
    89. 7510Species Fab ANO2 (mouse), kappa L chain [48754] (1 PDB entry)
    90. 7513Species Fab anti-nitrophenol (mouse), lambda L chain [48813] (1 PDB entry)
    91. 7518Species Fab B13I2 (mouse), kappa L chain [48760] (2 PDB entries)
    92. 7525Species Fab B7-15A2 (human), lambda L chain [48838] (1 PDB entry)
    93. 7528Species Fab B72.3 (mouse/human chimera), kappa L chain [48756] (1 PDB entry)
    94. 7531Species Fab BV04-01 (mouse), kappa L chain [48776] (2 PDB entries)
    95. 7536Species Fab C3, neutralizing type 1 poliovirus, (mouse), kappa L chain [48797] (1 PDB entry)
    96. 7539Species Fab CBR96 (mouse/human), kappa L chain [48814] (2 PDB entries)
    97. 7544Species Fab Cha255 (mouse), lambda L chain [48765] (2 PDB entries)
    98. 7549Species Fab CHI621 (mouse), kappa L chain [48824] (1 PDB entry)
    99. 7552Species Fab CNJ206 (mouse), kappa L chain [48792] (2 PDB entries)
    100. 7575Species Fab CTM01 (human construct), kappa L chain [48842] (1 PDB entry)
    101. 7580Species Fab CTM01 (mouse), kappa L chain [48841] (1 PDB entry)
    102. 7583Species Fab D1.3 (mouse), kappa L chain [48784] (19 PDB entries)
    103. 7622Species Fab D2.3 (mouse), kappa L chain [48829] (4 PDB entries)
    104. 7631Species Fab D2.4 (mouse), kappa L chain [48830] (1 PDB entry)
    105. 7636Species Fab D2.5 (mouse), kappa L chain [48831] (4 PDB entries)
    106. 7645Species Fab D44.1 (mouse), kappa L chain [48803] (2 PDB entries)
    107. 7652Species Fab DB3 (mouse), kappa L chain [48758] (6 PDB entries)
    108. 7665Species Fab Desire-1 (mouse), kappa L chain [48846] (1 PDB entry)
    109. 7668Species Fab directed agains the musk odorant traseolide, (mouse), kappa L chain [48881] (1 PDB entry)
    110. 7671Species Fab F11.2.32 (mouse), kappa L chain [48834] (2 PDB entries)
    111. 7680Species Fab F9.13.7 (mouse), kappa L chain [48795] (1 PDB entry)
    112. 7685Species Fab GH1002 (mouse), kappa L chain [48817] (1 PDB entry)
    113. 7688Species Fab H52 (synthetic, humanised version), kappa L chain [48769] (2 PDB entries)
    114. 7693Species Fab H57 (hamster), lambda L chain [48836] (1 PDB entry)
    115. 7698Species Fab HC19 (mouse), lambda L chain [48780] (4 PDB entries)
    116. 7707Species Fab HGR-2 F6, (mouse), kappa L chain [48895] (1 PDB entry)
    117. 7710Species Fab HIL (human), lambda L chain [48752] (1 PDB entry)
    118. 7715Species Fab HyHEL-10 (mouse), kappa L chain [48788] (2 PDB entries)
    119. 7720Species Fab HyHEL-5 (mouse), kappa L chain [48787] (3 PDB entries)
    120. 7727Species Fab J539 (mouse), kappa L chain [48768] (1 PDB entry)
    121. 7730Species Fab JE142 (mouse), kappa L chain [48789] (1 PDB entry)
    122. 7733Species Fab Jel 103 (mouse), kappa L chain [48794] (4 PDB entries)
    123. 7742Species Fab Kau cold agglutinin (human) IgM, kappa L chain [48764] (2 PDB entries)
    124. 7751Species Fab KOL (human), lambda L chain [48767] (2 PDB entries)
    125. 7756Species Fab LA-2 (mouse), kappa L chain [48821] (1 PDB entry)
    126. 7761Species Fab M41 (artificial design) [48845] (1 PDB entry)
    127. 7766Species Fab Mab1-IA (mouse), kappa L chain [48852] (1 PDB entry)
    128. Species Fab MAK33, (human), kappa L chain [48901] (1 PDB entry)
    129. 7774Species Fab MBR96 (mouse), kappa L chain [48815] (1 PDB entry)
    130. 7777Species Fab MCPC603 (human), kappa L chain [48770] (4 PDB entries)
    131. 7784Species Fab MN14C11.6 (mouse), kappa L chain [48827] (1 PDB entry)
    132. 7787Species Fab MoPC21 (mouse), kappa L chain [48801] (1 PDB entry)
    133. 7790Species Fab N10 (mouse), kappa L chain [48806] (1 PDB entry)
    134. 7793Species Fab N1G9 (mouse), lambda L chain [48811] (2 PDB entries)
    135. 7798Species Fab NC10 (mouse), kappa L chain [48804] (4 PDB entries)
    136. 7809Species Fab NC41 (mouse), kappa L chain [48790] (4 PDB entries)
    137. 7818Species Fab NEW (human), lambda L chain [48753] (1 PDB entry)
    138. 7821Species Fab NMC-4 (mouse), kappa L chain [48860] (2 PDB entries)
    139. 7826Species Fab of human IgM RF 2A2 [48896] (1 PDB entry)
    140. 7833Species Fab R19.9 (mouse), kappa L chain [48766] (2 PDB entries)
    141. 7838Species Fab R24, (mouse), kappa L chain [48884] (2 PDB entries)
    142. 7845Species Fab R6.5 (mouse), kappa L chain [48796] (1 PDB entry)
    143. 7848Species Fab SE155-4 (mouse), lambda L chain [48775] (5 PDB entries)
    144. 7859Species Fab TE33 (mouse), kappa L chain [48777] (1 PDB entry)
    145. 7862Species Fab TP7 (mouse), kappa L chain [48850] (2 PDB entries)
    146. 7867Species Fab TR1.9 (mouse/human), kappa L chain [48812] (1 PDB entry)
    147. 7870Species Fab Yst9.1 (mouse), kappa L chain [48774] (1 PDB entry)
    148. 7873Species Fab, anti-cyclosporin A, (mouse), kappa L chain [48798] (1 PDB entry)
    149. 7876Species Fab, anti-sweetener (mouse), kappa L chain [48781] (2 PDB entries)
    150. 7881Species Fv 4155 (mouse), kappa L chain [48832] (3 PDB entries)
    151. 7888Species Fv against Paracoccus denitrificans cytochrome c oxidase (mouse), kappa L chain [48840] (2 PDB entries)
    152. 7893Species Fv B1-8 (mouse), lambda L chain [48853] (3 PDB entries)
    153. 7904Species Fv D11.15 (mouse), kappa L chain [48786] (1 PDB entry)
    154. 7907Species Fv E5.2 (mouse), kappa L chain [48816] (1 PDB entry)
    155. 7910Species Fv M3C65, (human), lambda L chain [48910] (1 PDB entry)
    156. 7913Species Fv MEZ (human) IgM, kappa L chain [48763] (1 PDB entry)
    157. 7916Species Fv POT (human) IgM, kappa L chain [48762] (1 PDB entry)
    158. 7919Species Heterologous L chain dimer MCG-WEIR hybrid (human) [48931] (1 PDB entry)
    159. 7922Species HIV-1 neutralizing Fab 17B (human), kappa L chain [48854] (3 PDB entries)
    160. 7929Species Humanized and chimeric anti-gamma-interferon Fab [48866] (2 PDB entries)
    161. 7934Species Humanized anti-lysozyme Fv HuLys11 (mouse), kappa L chain [48858] (2 PDB entries)
    162. 7943Species IgM rheumatoid factor Fab (human), lambda L chain [48856] (1 PDB entry)
    163. 7946Species Influenza virus hemagglutinin-neutralizing Fab (mouse), kappa L chain [48861] (1 PDB entry)
    164. 7949Species Influenza virus hemagglutinin-neutralizing Fab BH151 (mouse), kappa L chain [48862] (1 PDB entry)
    165. 7952Species Intact antibody (lambda) MCG (human) [48929] (1 PDB entry)
    166. 7955Species Intact IgG1 antibody Mab61.1.3 (mouse), kappa L chain [48751] (1 PDB entry)
    167. 7960Species Intact IgG2a antibody Mab231 (mouse), kappa L chain [48750] (1 PDB entry)
    168. 7965Species Lambda L chain dimer MCG (human) [48930] (18 PDB entries)
    169. 8002Species Llama (Lama glama), anti-gonadotropin alpha subunit VH domain [48917] (1 PDB entry)
    170. 8004Species Llama (Lama glama), anti-RR6 VH domain [48918] (1 PDB entry)
    171. 8006Species Mature metal chelatase catalytic Fab, (human), kappa L chain [48879] (1 PDB entry)
    172. 8011Species Oxy-cope catalytic Fab az-28, chimeric (mouse V domains/human C1 domains) [48839] (4 PDB entries)
    173. 8024Species Polysialic acid-binding Fab (mouse), kappa L chain [48809] (1 PDB entry)
    174. 8027Species scFv C219, (mouse sequence-based), kappa L chain [48835] (2 PDB entries)
    175. 8036Species scFv dimer (L5MK16 diabody), based on: (mouse), kappa L chain [48799] (1 PDB entry)
    176. 8045Species scFv MAB198, (rat), kappa L chain [48887] (1 PDB entry)
    177. 8048Species scFv trivalent antibody, based on: (mouse), kappa L chain [48800] (1 PDB entry)
    178. 8053Species Sterolytic and amidolytic Fv 43c9, (mouse), kappa L chain [48883] (2 PDB entries)
    179. 8070Species Therapeutic CAMPATH-1H humanized fab (rat), kappa L chain [48868] (1 PDB entry)
    180. 8073Species Tumor-specific Fab SM3, (mouse), lambda L chain [48877] (1 PDB entry)
    181. 8076Species VEGF neutralizing Fab-12 (mouse), kappa L chain [48870] (2 PDB entries)
    182. 8085Species VH-P8 domain (human), camelized monomer [48913] (1 PDB entry)
    183. 8087Species VL domain (kappa) of antibody M29B, dimer synthetic [48919] (1 PDB entry)
  8. 8090Immunoreceptor CTLA-4 (CD152), N-terminal fragment [48939] (2 species)
    1. 8091Species Human (Homo sapiens) [TaxId:9606] [48940] (1 PDB entry)
    2. 8093Species Mouse (Mus musculus) [TaxId:10090] [48941] (1 PDB entry)
  9. 8098Junction adhesion molecule, JAM, N-terminal domain [48747] (1 species)
  10. 8101Myelin membrane adhesion molecule P0 [48728] (1 species)
  11. 8104N-terminal domain of sialoadhesin [48732] (1 species)
  12. 8110T-cell antigen receptor [48933] (5 species)
    1. 8111Species Human (Homo sapiens), alpha-chain [TaxId:9606] [48935] (6 PDB entries)
    2. 8118Species Human (Homo sapiens), beta-chain [TaxId:9606] [48937] (6 PDB entries)
    3. 8125Species Human (Homo sapiens), delta-chain [TaxId:9606] [48938] (1 PDB entry)
    4. 8128Species Mouse (Mus musculus), alpha-chain [TaxId:10090] [48934] (10 PDB entries)
    5. 8145Species Mouse (Mus musculus), beta-chain [TaxId:10090] [48936] (11 PDB entries)

More info for Family b.1.1.1: V set domains (antibody variable domain-like)

Timeline for Family b.1.1.1: V set domains (antibody variable domain-like):