SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Class b: All beta proteins

  1. Root: SCOP 1.55
  2. 6992Class b: All beta proteins [48724] (93 folds)

Folds:

  1. 6993b.1: Immunoglobulin-like beta-sandwich [48725] (14 superfamilies)
  2. 10320b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (7 superfamilies)
  3. 10499b.3: Prealbumin-like [49451] (6 superfamilies)
  4. 10887b.4: HSP40/DnaJ peptide-binding domain [49492] (1 superfamily)
  5. 10894b.5: alpha-Amylase inhibitor tendamistat [49497] (1 superfamily)
  6. 10904b.6: Cupredoxins [49502] (1 superfamily)
  7. 11282b.7: C2 domain-like [49561] (4 superfamilies)
  8. 11382b.8: TRAF domain [49598] (1 superfamily)
  9. 11435b.9: Neurophysin II [49605] (1 superfamily)
  10. 11446b.10: Viral coat and capsid proteins [49610] (1 superfamily)
  11. 11845b.11: gamma-Crystallin-like [49694] (1 superfamily)
  12. 11920b.12: Lipase/lipooxygenase domain [49722] (1 superfamily)
  13. 11958b.13: PNGase F-like [49741] (2 superfamilies)
  14. 11994b.14: Calpain large subunit, middle domain (domain III) [49757] (1 superfamily)
  15. 12002b.15: HSP20-like chaperones [49763] (1 superfamily)
  16. 12020b.16: Ecotin, trypsin inhibitor [49771] (1 superfamily)
  17. 12040b.17: Phosphatidylethanolamine binding protein [49776] (1 superfamily)
  18. 12057b.18: Galactose-binding domain-like [49784] (1 superfamily)
  19. 12156b.19: Segmented RNA-genome viruses' proteins [49817] (1 superfamily)
  20. 12233b.20: F-MuLV receptor-binding domain [49829] (1 superfamily)
  21. 12239b.21: Adenovirus fiber protein head domain (knob domain) [49834] (1 superfamily)
  22. 12261b.22: TNF-like [49841] (1 superfamily)
  23. 12312b.23: Spermadhesin, CUB domain [49853] (1 superfamily)
  24. 12324b.24: Hyaluronate lyase-like, C-terminal domain [49862] (1 superfamily)
  25. 12333b.25: Osmotin, thaumatin-like protein [49869] (1 superfamily)
  26. 12349b.26: SMAD/FHA domain [49878] (1 superfamily)
  27. 12375b.27: Soluble secreted chemokine inhibitor, VCCI [49888] (1 superfamily)
  28. 12382b.28: Paculovirus p35 [49893] (1 superfamily)
  29. 12390b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
  30. 12903b.30: Supersandwich [49993] (3 superfamilies)
  31. 12999b.31: EV matrix protein [50011] (1 superfamily)
  32. 13005b.32: gp9 [50016] (1 superfamily)
  33. 13012b.33: ISP domain [50021] (1 superfamily)
  34. 13047b.34: SH3-like barrel [50036] (7 superfamilies)
  35. 13334b.35: GroES-like [50128] (2 superfamilies)
  36. 13490b.36: PDZ domain-like [50155] (1 superfamily)
  37. 13527b.37: N-terminal domains of the minor coat protein g3p [50175] (1 superfamily)
  38. 13541b.38: Sm motif of small nuclear ribonucleoproteins, SNRNP [50181] (1 superfamily)
  39. 13566b.39: Ribosomal protein L14 [50192] (1 superfamily)
  40. 13574b.40: OB-fold [50198] (7 superfamilies)
  41. 14365b.41: Photosynthetic reaction centre, H-chain, cytoplasmic domain [50345] (1 superfamily)
  42. 14401b.42: beta-Trefoil [50352] (5 superfamilies)
  43. 14602b.43: Reductase/isomerase/elongation factor common domain [50412] (3 superfamilies)
  44. 14748b.44: EF-Tu/eEF-1alpha C-terminal domain [50464] (1 superfamily)
  45. 14785b.45: FMN-binding split barrel [50474] (1 superfamily)
  46. 14807b.46: FMT C-terminal domain-like [50485] (1 superfamily)
  47. 14823b.47: Trypsin-like serine proteases [50493] (1 superfamily)
  48. 15604b.48: mu transposase, C-terminal domain [50609] (1 superfamily)
  49. 15612b.49: Domain of alpha and beta subunits of F1 ATP synthase-like [50614] (2 superfamilies)
  50. 15694b.50: Acid proteases [50629] (1 superfamily)
  51. 16129b.51: ValRS/IleRS editing domain [50676] (1 superfamily)
  52. 16143b.52: Double psi beta-barrel [50684] (2 superfamilies)
  53. 16214b.53: Ribosomal protein L25-like [50714] (1 superfamily)
  54. 16235b.54: Core binding factor beta [50722] (1 superfamily)
  55. 16243b.55: PH domain-like [50728] (1 superfamily)
  56. 16357b.56: Transcription factor IIA (TFIIA), N-terminal domain [50783] (1 superfamily)
  57. 16364b.57: Herpes virus serine proteinase, assemblin [50788] (1 superfamily)
  58. 16389b.58: Pyruvate kinase beta-barrel domain [50799] (1 superfamily)
  59. 16448b.59: XRCC4, N-terminal domain [50808] (1 superfamily)
  60. 16455b.60: Lipocalins [50813] (1 superfamily)
  61. 16669b.61: Streptavidin-like [50875] (3 superfamilies)
  62. 16874b.62: Cyclophilin (peptidylprolyl isomerase) [50890] (1 superfamily)
  63. 16980b.63: Oncogene products [50903] (1 superfamily)
  64. 16991b.64: Extracytoplasmic domain of cation-dependent mannose 6-phosphate receptor [50910] (1 superfamily)
  65. 17000b.65: tripple barrel [50915] (1 superfamily)
  66. 17015b.66: 4-bladed beta-propeller [50922] (1 superfamily)
  67. 17038b.67: 5-bladed beta-propeller [50933] (1 superfamily)
  68. 17044b.68: 6-bladed beta-propeller [50938] (4 superfamilies)
  69. 17159b.69: 7-bladed beta-propeller [50964] (7 superfamilies)
  70. 17239b.70: 8-bladed beta-propeller [50997] (2 superfamilies)
  71. 17288b.71: alpha-Amylases, C-terminal beta-sheet domain [51010] (1 superfamily)
  72. 17410b.72: WW domain-like [51044] (2 superfamilies)
  73. 17439b.73: Head domain of nucleotide exchange factor GrpE [51063] (1 superfamily)
  74. 17446b.74: Carbonic anhydrase [51068] (1 superfamily)
  75. 17612b.75: Bacteriochlorophyl A protein [51080] (1 superfamily)
  76. 17621b.76: Outer surface protein A [51086] (1 superfamily)
  77. 17629b.77: beta-Prism I [51091] (3 superfamilies)
  78. 17659b.78: beta-Prism II [51109] (1 superfamily)
  79. 17695b.79: beta-Roll [51119] (1 superfamily)
  80. 17707b.80: Single-stranded right-handed beta-helix [51125] (2 superfamilies)
  81. 17776b.81: Single-stranded left-handed beta-helix [51160] (2 superfamilies)
  82. 17821b.82: Double-stranded beta-helix [51181] (5 superfamilies)
  83. 17996b.83: Triple beta-spiral [51224] (1 superfamily)
  84. 18007b.84: Barrel-sandwich hybrid [51229] (3 superfamilies)
  85. 18112b.85: beta-clip [51268] (5 superfamilies)
  86. 18231b.86: Hedgehog/intein (Hint) domain [51293] (1 superfamily)
  87. 18251b.87: LexA/Signal peptidase [51305] (1 superfamily)
  88. b.88: RabGEF Mss4 [51315] (1 superfamily)
  89. 18280b.89: Cyanovirin-N [51321] (1 superfamily)
  90. 18288b.90: Head-binding domain of phage p22 tailspike protein [51326] (1 superfamily)
  91. 18299b.91: E2 regulatory, transactivation domain [51331] (1 superfamily)
  92. 18307b.92: alpha-Subunit of urease, composite domain [51337] (1 superfamily)
  93. 18342b.93: Epsilon subunit of F1F0-ATP synthase N-terminal domain [51343] (1 superfamily)

More info for Class b: All beta proteins

Timeline for Class b: All beta proteins: