SCOPe 2.08: Family d.211.1.1: Ankyrin repeat

Lineage for Family d.211.1.1: Ankyrin repeat

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.211: beta-hairpin-alpha-hairpin repeat [74651] (2 superfamilies)
   multiple repeats of beta(2)-alpha(2) motif

4. Superfamily d.211.1: Ankyrin repeat [48403] (2 families)
   repeats organized in elongated structures

5. Family d.211.1.1: Ankyrin repeat [48404] (21 proteins)
   this is a repeat family; one repeat unit is 1ixv A:101-134 found in domain

Proteins:

1. 26S proteasome non-ATPase regulatory subunit 10, gankyrin [102881] (3 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [102883] (1 PDB entry)

   2. Species Human (Homo sapiens) [TaxId:9606] [102882] (3 PDB entries)
      Uniprot O75832

   3. Species Mouse (Mus musculus) [TaxId:10090] [187642] (2 PDB entries)

2. 53BP2 [48405] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [48406] (1 PDB entry)

3. Ankyrin-R [82632] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [82633] (1 PDB entry)

4. ASB9 [267667] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [267753] (1 PDB entry)

5. bcl-3 [69091] (1 species)
   a member of the I-kappa-B family

   • Species Human (Homo sapiens) [TaxId:9606] [69092] (2 PDB entries)

6. Calcium-activated non-selective cation channel TRPM4 [419151] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [419673] (1 PDB entry)

7. Cell cycle inhibitor p16ink4A [48414] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [48415] (4 PDB entries)

   2. Species Mouse (Mus musculus) [TaxId:10090] [48416] (1 PDB entry)

8. Cell cycle inhibitor p19ink4D [48409] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [48410] (2 PDB entries)

   2. Species Mouse (Mus musculus) [TaxId:10090] [48411] (1 PDB entry)

9. GA bindinig protein (GABP) beta 1 [48407] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [48408] (1 PDB entry)

10. I-kappa-B-alpha [48417] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [48418] (2 PDB entries)

11. Lin-12 [160152] (1 species)

    • Species Nematode (Caenorhabditis elegans) [TaxId:6239] [160153] (1 PDB entry)
      Uniprot P14585 1021-1297

12. Mechanotransduction channel NOMPC [419148] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [419670] (1 PDB entry)

13. Myosin phosphatase targeting subunit 1, MYPT1 [110891] (1 species)

    • Species Chicken (Gallus gallus) [TaxId:9031] [110892] (1 PDB entry)
      Uniprot Q90623 1-299

14. Myotrophin [48419] (2 species)

    1. Species Mouse (Mus musculus) [TaxId:10090] [255385] (1 PDB entry)

    2. Species Norway rat (Rattus norvegicus) [TaxId:10116] [48420] (2 PDB entries)

15. Neurogenic locus notch receptor domain [102879] (1 species)

    • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [102880] (1 PDB entry)

16. p18ink4C(ink6) [48412] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [48413] (6 PDB entries)

17. Pyk2-associated protein beta [48423] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [48424] (1 PDB entry)

18. RNase L, 2-5a-dependent ribonuclease [117879] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [117880] (1 PDB entry)
      Uniprot Q05823 21-305

19. Swi6 ankyrin-repeat fragment [48421] (1 species)
    interrupted by an insertion

    • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [48422] (1 PDB entry)

20. Transcription factor inhibitor I-kappa-B-beta, IKBB [82634] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [82635] (2 PDB entries)

21. automated matches [190101] (7 species)
    not a true protein

    1. Species Artificial gene [TaxId:32630] [193962] (5 PDB entries)

    2. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186823] (3 PDB entries)

    3. Species Escherichia coli [TaxId:562] [189927] (3 PDB entries)

    4. Species Human (Homo sapiens) [TaxId:9606] [187689] (13 PDB entries)

    5. Species Mouse (Mus musculus) [TaxId:10090] [187645] (3 PDB entries)

    6. Species Ribosome display [TaxId:248461] [316617] (1 PDB entry)

    7. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [161332] (2 PDB entries)

More info for Family d.211.1.1: Ankyrin repeat

Timeline for Family d.211.1.1: Ankyrin repeat:

• Family d.211.1.1: Ankyrin repeat first appeared (with stable ids) in SCOP 1.55, called Family a.118.2.1: Ankyrin repeat
  
• Family d.211.1.1: Ankyrin repeat appears in SCOPe 2.07