SCOPe 2.08: Protein: Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg

Lineage for Protein: Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)

Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

Superfamily a.102.4: Terpenoid cyclases/Protein prenyltransferases [48239] (5 families)
Family a.102.4.4: Complement components [48251] (4 proteins)
probably related to other families, but has no known enzymatic activity
Protein Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg [48252] (2 species)

Species:

Human (Homo sapiens) [TaxId:9606] [48253] (19 PDB entries)
1. Domain for 1c3d:
  - Domain d1c3da1: 1c3d A:3-294 [18874]
    Other proteins in same PDB: d1c3da2
    complexed with gol
2. Domain for 1ghq:
  - Domain d1ghqa1: 1ghq A:3-307 [60521]
    Other proteins in same PDB: d1ghqa2, d1ghqb1, d1ghqb2, d1ghqb3, d1ghqc1, d1ghqc2, d1ghqc3
    complexed with ndg, zn
3. Domain for 1w2s:
  - Domain d1w2sa1: 1w2s A:3-307 [120604]
    Other proteins in same PDB: d1w2sa2, d1w2sb1, d1w2sb2
    automatically matched to d1ghqa_
4. Domain for 2a73:
  - Domain d2a73b7: 2a73 B:963-1268 [241228]
    Other proteins in same PDB: d2a73.1, d2a73a1, d2a73a2, d2a73a3, d2a73a4, d2a73a5, d2a73a6, d2a73b1, d2a73b2, d2a73b3, d2a73b4, d2a73b5, d2a73b6, d2a73b8
5. Domains for 2gox:
  1. Domain d2goxa1: 2gox A:996-1287 [161433]
    Other proteins in same PDB: d2goxa2, d2goxb1, d2goxc2, d2goxd_
    automated match to d1c3da_
  2. Domain d2goxc1: 2gox C:996-1287 [161434]
    Other proteins in same PDB: d2goxa2, d2goxb1, d2goxc2, d2goxd_
    automated match to d1c3da_
6. Domains for 2noj:
  1. Domain d2noja_: 2noj A: [148324]
    Other proteins in same PDB: d2nojb1, d2nojd_, d2nojf_, d2nojh_
    automated match to d1c3da_
  2. Domain d2nojc_: 2noj C: [148326]
    Other proteins in same PDB: d2nojb1, d2nojd_, d2nojf_, d2nojh_
    automated match to d1c3da_
  3. Domain d2noje_: 2noj E: [148328]
    Other proteins in same PDB: d2nojb1, d2nojd_, d2nojf_, d2nojh_
    automated match to d1c3da_
  4. Domain d2nojg_: 2noj G: [148330]
    Other proteins in same PDB: d2nojb1, d2nojd_, d2nojf_, d2nojh_
    automated match to d1c3da_
7. Domain for 2wy7:
  - Domain d2wy7a_: 2wy7 A: [169687]
    automated match to d1ghqa_
    complexed with gol
8. Domain for 2wy8:
  - Domain d2wy8a_: 2wy8 A: [169688]
    automated match to d1ghqa_
    complexed with gol
9. Domains for 2xqw:
  1. Domain d2xqwa1: 2xqw A:3-294 [170300]
    Other proteins in same PDB: d2xqwa2, d2xqwb2
    automated match to d1c3da_
  2. Domain d2xqwb1: 2xqw B:3-294 [170301]
    Other proteins in same PDB: d2xqwa2, d2xqwb2
    automated match to d1c3da_
10. Domains for 3d5r:
  1. Domain d3d5ra2: 3d5r A:7-298 [157403]
    Other proteins in same PDB: d3d5ra3, d3d5rb3, d3d5rc1, d3d5rd_
    automated match to d1c3da_
  2. Domain d3d5rb2: 3d5r B:7-298 [157404]
    Other proteins in same PDB: d3d5ra3, d3d5rb3, d3d5rc1, d3d5rd_
    automated match to d1c3da_
11. Domains for 3d5s:
  1. Domain d3d5sa2: 3d5s A:7-298 [157407]
    Other proteins in same PDB: d3d5sa3, d3d5sb3, d3d5sc1, d3d5sd_
    automated match to d1c3da_
  2. Domain d3d5sb2: 3d5s B:7-298 [157408]
    Other proteins in same PDB: d3d5sa3, d3d5sb3, d3d5sc1, d3d5sd_
    automated match to d1c3da_
12. Domains for 3oed:
  1. Domain d3oeda1: 3oed A:3-294 [248211]
    Other proteins in same PDB: d3oeda2, d3oedb2, d3oedc1, d3oedc2, d3oedd1, d3oedd2
    automated match to d1ghqa_
  2. Domain d3oedb1: 3oed B:3-294 [248212]
    Other proteins in same PDB: d3oeda2, d3oedb2, d3oedc1, d3oedc2, d3oedd1, d3oedd2
    automated match to d1ghqa_
13. Domains for 3rj3:
  1. Domain d3rj3a_: 3rj3 A: [195832]
    automated match to d1ghqa_
    complexed with gol; mutant
  2. Domain d3rj3b_: 3rj3 B: [195830]
    automated match to d1ghqa_
    complexed with gol; mutant
  3. Domain d3rj3c_: 3rj3 C: [195831]
    automated match to d1ghqa_
    complexed with gol; mutant
14. Domain for 4m76:
  - Domain d4m76a1: 4m76 A:994-1287 [228103]
    Other proteins in same PDB: d4m76a2, d4m76b_
    automated match to d2goxa_
    complexed with ni
15. Domains for 4ont:
  1. Domain d4onta1: 4ont A:3-294 [261235]
    Other proteins in same PDB: d4onta2
    automated match to d1ghqa_
    complexed with gol
  2. Domain d4ontb_: 4ont B: [261369]
    Other proteins in same PDB: d4onta2
    automated match to d1ghqa_
    complexed with gol
  3. Domain d4ontc_: 4ont C: [261370]
    Other proteins in same PDB: d4onta2
    automated match to d1ghqa_
    complexed with gol
16. Domains for 4zh1:
  1. Domain d4zh1a1: 4zh1 A:3-294 [280572]
    Other proteins in same PDB: d4zh1a2
    automated match to d1ghqa_
    complexed with gol
  2. Domain d4zh1b_: 4zh1 B: [280571]
    Other proteins in same PDB: d4zh1a2
    automated match to d1ghqa_
    complexed with gol
  3. Domain d4zh1c_: 4zh1 C: [280574]
    Other proteins in same PDB: d4zh1a2
    automated match to d1ghqa_
    complexed with gol
17. Domains for 5nbq:
  1. Domain d5nbqa_: 5nbq A: [342361]
    automated match to d2wy8a_
  2. Domain d5nbqb_: 5nbq B: [342304]
    automated match to d2wy8a_
  3. Domain d5nbqc_: 5nbq C: [342300]
    automated match to d2wy8a_
18. Domains for 6rmt:
  1. Domain d6rmta_: 6rmt A: [395676]
    automated match to d3rj3b_
    complexed with cl
  2. Domain d6rmtb_: 6rmt B: [395437]
    automated match to d3rj3b_
    complexed with cl
19. Domains for 6rmu:
  1. Domain d6rmua_: 6rmu A: [395427]
    automated match to d3rj3b_
    complexed with edo, peg
  2. Domain d6rmub_: 6rmu B: [395433]
    automated match to d3rj3b_
    complexed with edo, peg
Norway rat (Rattus norvegicus) [TaxId:10116] [48254] (2 PDB entries)
1. Domain for 1qqf:
  - Domain d1qqfa_: 1qqf A: [18875]
    N-terminally truncated fragment
2. Domains for 1qsj:
  1. Domain d1qsja_: 1qsj A: [18876]
    N-terminally truncated fragment
  2. Domain d1qsjb_: 1qsj B: [18877]
    N-terminally truncated fragment
  3. Domain d1qsjc_: 1qsj C: [18878]
    N-terminally truncated fragment
  4. Domain d1qsjd_: 1qsj D: [18879]
    N-terminally truncated fragment

More info for Protein Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg from a.102.4.4: Complement components

Timeline for Protein Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg from a.102.4.4: Complement components:

Protein Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg from a.102.4.4: Complement components first appeared (with stable ids) in SCOP 1.55, called Protein C3D, a C3 fragment and ligand for complement receptor 2 from a.102.4.4: C3D, a C3 fragment and ligand for complement receptor 2
Protein Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg from a.102.4.4: Complement components appears in SCOPe 2.07