SCOPe 2.05: Family a.93.1.1: CCP-like

Lineage for Family a.93.1.1: CCP-like

1. Root: SCOPe 2.05

2. Class a: All alpha proteins [46456] (286 folds)

3. Fold a.93: Heme-dependent peroxidases [48112] (1 superfamily)
   multihelical; consists of two all-alpha domains

4. Superfamily a.93.1: Heme-dependent peroxidases [48113] (4 families)

5. Family a.93.1.1: CCP-like [48114] (5 proteins)

Proteins:

1. Ascorbate peroxidase [48123] (3 species)

   1. Species Pea (Pisum sativum) [TaxId:3888] [48124] (1 PDB entry)

   2. Species Soybean (Glycine max) [TaxId:3847] [89092] (9 PDB entries)
      Uniprot Q43758

   3. Species Tobacco (Nicotiana tabacum) [TaxId:4097] [101336] (1 PDB entry)
      chloroplastic isoform

2. Cytochrome c peroxidase, CCP [48119] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [48120] (176 PDB entries)
     Uniprot P00431

3. Fungal peroxidase (ligninase) [88935] (3 species)

   1. Species Arthromyces ramosus [TaxId:5451] [48118] (14 PDB entries)

   2. Species Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId:5306] [48116] (9 PDB entries)

   3. Species Inky cap (Coprinus cinereus) [TaxId:5346] [74752] (5 PDB entries)

4. Plant peroxidase [48125] (6 species)

   1. Species Barley (Hordeum vulgare), peroxidase 1 [TaxId:4513] [48129] (1 PDB entry)

   2. Species Horseradish (Armoracia rusticana) [TaxId:3704] [48126] (29 PDB entries)

   3. Species Peanut (Arachis hypogaea) [TaxId:3818] [48127] (1 PDB entry)

   4. Species Soybean (Glycine max) [TaxId:3847] [48128] (1 PDB entry)

   5. Species Thale cress (Arabidopsis thaliana), peroxidase A2 [TaxId:3702] [48131] (2 PDB entries)

   6. Species Thale cress (Arabidopsis thaliana), peroxidase N [TaxId:3702] [48130] (1 PDB entry)

5. automated matches [190089] (9 species)
   not a true protein

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188305] (24 PDB entries)

   2. Species Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId:5306] [186892] (6 PDB entries)

   3. Species Ceriporiopsis subvermispora [TaxId:42742] [261492] (5 PDB entries)

   4. Species Ficus benghalensis [TaxId:309271] [257753] (1 PDB entry)

   5. Species Horseradish (Armoracia rusticana) [TaxId:3704] [186811] (2 PDB entries)

   6. Species Radish (Raphanus sativus) [TaxId:3726] [194372] (1 PDB entry)

   7. Species Saccharomyces cerevisiae [TaxId:559292] [269589] (3 PDB entries)

   8. Species Sorghum bicolor [TaxId:4558] [280251] (1 PDB entry)

   9. Species Soybean (Glycine max) [TaxId:3847] [187116] (17 PDB entries)

More info for Family a.93.1.1: CCP-like

Timeline for Family a.93.1.1: CCP-like:

• Family a.93.1.1: CCP-like first appeared (with stable ids) in SCOP 1.55, called Family a.93.1.1: Cytochrome c peroxidase-like
  
• Family a.93.1.1: CCP-like appears in SCOPe 2.04
  
• Family a.93.1.1: CCP-like appears in SCOPe 2.06
  
• Family a.93.1.1: CCP-like appears in the current release, SCOPe 2.08