SCOPe 2.06: Species: Human immunodeficiency virus type 1 [TaxId: 11676]

Lineage for Species: Human immunodeficiency virus type 1 [TaxId: 11676]

Root: SCOPe 2.06
Class a: All alpha proteins [46456] (289 folds)
Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
core: 5 helices; bundle
Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families)
Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 proteins)
Protein HIV-1 capsid protein [47945] (1 species)
Species Human immunodeficiency virus type 1 [TaxId:11676] [47946] (44 PDB entries)

PDB entries in Species: Human immunodeficiency virus type 1 [TaxId: 11676]:

Domain(s) for 1afv:
1. Domain d1afva_: 1afv A: [18324]
  Other proteins in same PDB: d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl1, d1afvl2, d1afvm1, d1afvm2
  complexed with pb
2. Domain d1afvb_: 1afv B: [18325]
  Other proteins in same PDB: d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl1, d1afvl2, d1afvm1, d1afvm2
  complexed with pb
Domain(s) for 1ak4:
1. Domain d1ak4c_: 1ak4 C: [18321]
  Other proteins in same PDB: d1ak4a_, d1ak4b_
2. Domain d1ak4d_: 1ak4 D: [18322]
  Other proteins in same PDB: d1ak4a_, d1ak4b_
Domain(s) for 1e6j:
- Domain d1e6jp2: 1e6j P:11-147 [18323]
  Other proteins in same PDB: d1e6jh1, d1e6jh2, d1e6jl1, d1e6jl2, d1e6jp1
Domain(s) for 1gwp:
- Domain d1gwpa_: 1gwp A: [70674]
Domain(s) for 1l6n:
- Domain d1l6na2: 1l6n A:131-283 [73625]
  Other proteins in same PDB: d1l6na1, d1l6na3
Domain(s) for 1m9c:
1. Domain d1m9cc_: 1m9c C: [84888]
  Other proteins in same PDB: d1m9ca_, d1m9cb_
2. Domain d1m9cd_: 1m9c D: [84889]
  Other proteins in same PDB: d1m9ca_, d1m9cb_
Domain(s) for 1m9d:
1. Domain d1m9dc_: 1m9d C: [84892]
  Other proteins in same PDB: d1m9da_, d1m9db_
2. Domain d1m9dd_: 1m9d D: [84893]
  Other proteins in same PDB: d1m9da_, d1m9db_
Domain(s) for 1m9e:
1. Domain d1m9ec_: 1m9e C: [84896]
  Other proteins in same PDB: d1m9ea_, d1m9eb_
2. Domain d1m9ed_: 1m9e D: [84897]
  Other proteins in same PDB: d1m9ea_, d1m9eb_
Domain(s) for 1m9f:
1. Domain d1m9fc_: 1m9f C: [84900]
  Other proteins in same PDB: d1m9fa_, d1m9fb_
2. Domain d1m9fd_: 1m9f D: [84901]
  Other proteins in same PDB: d1m9fa_, d1m9fb_
Domain(s) for 1m9x:
1. Domain d1m9xc_: 1m9x C: [84907]
  Other proteins in same PDB: d1m9xa_, d1m9xb_, d1m9xe_, d1m9xf_
2. Domain d1m9xd_: 1m9x D: [84908]
  Other proteins in same PDB: d1m9xa_, d1m9xb_, d1m9xe_, d1m9xf_
3. Domain d1m9xg_: 1m9x G: [84911]
  Other proteins in same PDB: d1m9xa_, d1m9xb_, d1m9xe_, d1m9xf_
4. Domain d1m9xh_: 1m9x H: [84912]
  Other proteins in same PDB: d1m9xa_, d1m9xb_, d1m9xe_, d1m9xf_
Domain(s) for 1m9y:
1. Domain d1m9yc_: 1m9y C: [84915]
  Other proteins in same PDB: d1m9ya_, d1m9yb_, d1m9ye_, d1m9yf_
2. Domain d1m9yd_: 1m9y D: [84916]
  Other proteins in same PDB: d1m9ya_, d1m9yb_, d1m9ye_, d1m9yf_
3. Domain d1m9yg_: 1m9y G: [84919]
  Other proteins in same PDB: d1m9ya_, d1m9yb_, d1m9ye_, d1m9yf_
4. Domain d1m9yh_: 1m9y H: [84920]
  Other proteins in same PDB: d1m9ya_, d1m9yb_, d1m9ye_, d1m9yf_
Domain(s) for 2gol:
1. Domain d2golb_: 2gol B: [135439]
  Other proteins in same PDB: d2gola_
  automated match to d1afva_
  complexed with so4
2. Domain d2gold_: 2gol D: [135440]
  Other proteins in same PDB: d2gola_
  automated match to d1afva_
  complexed with so4
Domain(s) for 2gon:
1. Domain d2gona_: 2gon A: [164784]
  automated match to d1afva_
  complexed with flc
2. Domain d2gonb_: 2gon B: [164785]
  automated match to d1afva_
  complexed with flc
3. Domain d2gonc_: 2gon C: [164786]
  automated match to d1afva_
  complexed with flc
4. Domain d2gond_: 2gon D: [164787]
  automated match to d1afva_
  complexed with flc
Domain(s) for 2jpr:
- Domain d2jpra_: 2jpr A: [148169]
  automated match to d1afva_
  complexed with jpr
Domain(s) for 2m8l:
1. Domain d2m8la1: 2m8l A:1-147 [243140]
  Other proteins in same PDB: d2m8la2, d2m8lb2
  automated match to d3ntea1
2. Domain d2m8lb1: 2m8l B:1-147 [243142]
  Other proteins in same PDB: d2m8la2, d2m8lb2
  automated match to d3ntea1
Domain(s) for 2m8n:
- Domain d2m8na1: 2m8n A:1-147 [243144]
  Other proteins in same PDB: d2m8na2
  automated match to d3ntea1
Domain(s) for 2m8p:
- Domain d2m8pa1: 2m8p A:1-147 [243146]
  Other proteins in same PDB: d2m8pa2
  automated match to d3ntea1
  mutant
Domain(s) for 2pwm:
1. Domain d2pwma_: 2pwm A: [167302]
  automated match to d1afva_
  complexed with cl
2. Domain d2pwmb_: 2pwm B: [167303]
  automated match to d1afva_
  complexed with cl
3. Domain d2pwmc_: 2pwm C: [167304]
  automated match to d1afva_
  complexed with cl
4. Domain d2pwmd_: 2pwm D: [167305]
  automated match to d1afva_
  complexed with cl
5. Domain d2pwme_: 2pwm E: [167306]
  automated match to d1afva_
  complexed with cl
6. Domain d2pwmf_: 2pwm F: [167307]
  automated match to d1afva_
  complexed with cl
7. Domain d2pwmg_: 2pwm G: [167308]
  automated match to d1afva_
  complexed with cl
8. Domain d2pwmh_: 2pwm H: [167309]
  automated match to d1afva_
  complexed with cl
Domain(s) for 2pwo:
1. Domain d2pwoa_: 2pwo A: [167310]
  automated match to d1afva_
  complexed with cl
2. Domain d2pwob_: 2pwo B: [167311]
  automated match to d1afva_
  complexed with cl
3. Domain d2pwoc_: 2pwo C: [167312]
  automated match to d1afva_
  complexed with cl
4. Domain d2pwod_: 2pwo D: [167313]
  automated match to d1afva_
  complexed with cl
Domain(s) for 3dik:
- Domain d3dika2: 3dik A:11-147 [157752]
  Other proteins in same PDB: d3dika1
  automatically matched to d1e6jp2
Domain(s) for 4dga:
1. Domain d4dgac_: 4dga C: [196071]
  Other proteins in same PDB: d4dgaa_, d4dgab_
  automated match to d1m9dc_
2. Domain d4dgad_: 4dga D: [196072]
  Other proteins in same PDB: d4dgaa_, d4dgab_
  automated match to d1m9dc_
Domain(s) for 4dge:
1. Domain d4dgec_: 4dge C: [219749]
  Other proteins in same PDB: d4dgea_, d4dgeb_
  automated match to d4dgac_
  mutant
2. Domain d4dged_: 4dge D: [219750]
  Other proteins in same PDB: d4dgea_, d4dgeb_
  automated match to d4dgac_
  mutant
Domain(s) for 4e91:
1. Domain d4e91a_: 4e91 A: [197294]
  automated match to d1afva_
  complexed with 0oe, 0of, iod
2. Domain d4e91b_: 4e91 B: [197293]
  automated match to d1afva_
  complexed with 0oe, 0of, iod
Domain(s) for 4e92:
1. Domain d4e92a_: 4e92 A: [220378]
  automated match to d1m9cc_
  complexed with 0oe, 0og
2. Domain d4e92b_: 4e92 B: [220379]
  automated match to d1m9cc_
  complexed with 0oe, 0og
Domain(s) for 4inb:
- Domain d4inba_: 4inb A: [223269]
  automated match to d1m9cc_
  complexed with 1f6, na
Domain(s) for 4j93:
- Domain d4j93a_: 4j93 A: [223623]
  automated match to d1m9cc_
  complexed with 0oe, 1jr
Domain(s) for 4lqw:
1. Domain d4lqwc_: 4lqw C: [224747]
  Other proteins in same PDB: d4lqwa1, d4lqwa2, d4lqwb1, d4lqwb2
  automated match to d1m9cc_
2. Domain d4lqwd_: 4lqw D: [224748]
  Other proteins in same PDB: d4lqwa1, d4lqwa2, d4lqwb1, d4lqwb2
  automated match to d1m9cc_
Domain(s) for 4nx4:
- Domain d4nx4c_: 4nx4 C: [237207]
  automated match to d1m9cc_
  complexed with cl, jpr, zn
Domain(s) for 4qnb:
- Domain d4qnba1: 4qnb A:1-147 [268615]
  Other proteins in same PDB: d4qnba2
  automated match to d2m8la1
  complexed with 1b0
Domain(s) for 4u0e:
- Domain d4u0ea1: 4u0e A:1-147 [267416]
  Other proteins in same PDB: d4u0ea2
  automated match to d2m8la1
  complexed with 1b0, cl
Domain(s) for 4u0f:
- Domain d4u0fa1: 4u0f A:1-147 [260979]
  Other proteins in same PDB: d4u0fa2
  automated match to d2m8lb1
  complexed with 3a8, edo
Domain(s) for 4wym:
1. Domain d4wyma1: 4wym A:1-147 [262158]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
2. Domain d4wymb1: 4wym B:1-147 [262165]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
3. Domain d4wymc1: 4wym C:1-147 [262163]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
4. Domain d4wymd1: 4wym D:1-147 [262160]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
5. Domain d4wyme1: 4wym E:1-147 [262155]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
6. Domain d4wymf1: 4wym F:1-147 [262154]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
7. Domain d4wymg1: 4wym G:1-147 [262166]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
8. Domain d4wymh1: 4wym H:1-147 [262172]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
9. Domain d4wymi1: 4wym I:1-147 [262174]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
10. Domain d4wymj1: 4wym J:1-147 [262162]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
11. Domain d4wymk1: 4wym K:1-147 [262164]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
12. Domain d4wyml1: 4wym L:1-147 [262175]
  Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
  automated match to d2m8lb1
Domain(s) for 4xfx:
- Domain d4xfxa1: 4xfx A:1-147 [273811]
  Other proteins in same PDB: d4xfxa2
  automated match to d2m8la1
  complexed with cl, iod
Domain(s) for 4xfy:
- Domain d4xfya1: 4xfy A:1-147 [273802]
  Other proteins in same PDB: d4xfya2
  automated match to d2m8la1
  complexed with 1pe, cl
Domain(s) for 4xfz:
- Domain d4xfza1: 4xfz A:1-147 [273809]
  Other proteins in same PDB: d4xfza2
  automated match to d2m8la1
  complexed with 1b0, cl, iod
Domain(s) for 4xro:
- Domain d4xroa1: 4xro A:1-147 [275064]
  Other proteins in same PDB: d4xroa2
  automated match to d2m8la1
Domain(s) for 4xrq:
- Domain d4xrqa1: 4xrq A:1-147 [275062]
  Other proteins in same PDB: d4xrqa2
  automated match to d2m8la1
  complexed with 1b0
Domain(s) for 5hgk:
1. Domain d5hgka_: 5hgk A: [321037]
  automated match to d1m9cc_
  complexed with cl
2. Domain d5hgkb_: 5hgk B: [321039]
  automated match to d1m9cc_
  complexed with cl
Domain(s) for 5hgl:
1. Domain d5hgla1: 5hgl A:1-147 [321005]
  Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
  automated match to d4xfxa1
  complexed with 1b0, cl
2. Domain d5hglb1: 5hgl B:1-147 [321021]
  Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
  automated match to d4xfxa1
  complexed with 1b0, cl
3. Domain d5hglc1: 5hgl C:1-147 [321035]
  Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
  automated match to d4xfxa1
  complexed with 1b0, cl
4. Domain d5hgld1: 5hgl D:1-147 [321013]
  Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
  automated match to d4xfxa1
  complexed with 1b0, cl
5. Domain d5hgle1: 5hgl E:1-147 [321019]
  Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
  automated match to d4xfxa1
  complexed with 1b0, cl
6. Domain d5hglf1: 5hgl F:1-147 [321017]
  Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
  automated match to d4xfxa1
  complexed with 1b0, cl
Domain(s) for 5hgm:
- Domain d5hgma1: 5hgm A:1-147 [321023]
  Other proteins in same PDB: d5hgma2
  automated match to d4xfxa1
  complexed with dtp
Domain(s) for 5hgn:
- Domain d5hgna1: 5hgn A:1-147 [321122]
  Other proteins in same PDB: d5hgna2
  automated match to d4xfxa1
Domain(s) for 5hgo:
- Domain d5hgoa1: 5hgo A:1-147 [321007]
  Other proteins in same PDB: d5hgoa2
  automated match to d4xfxa1
  mutant
Domain(s) for 5hgp:
- Domain d5hgpa1: 5hgp A:1-147 [324247]
  Other proteins in same PDB: d5hgpa2
  automated match to d4xfxa1
  complexed with bhc
Domain(s) for 5jpa:
- Domain d5jpaa1: 5jpa A:1-147 [321101]
  Other proteins in same PDB: d5jpaa2
  automated match to d4xfxa1
  mutant

More info for Species Human immunodeficiency virus type 1 [TaxId:11676] from a.73.1.1 HIV-1 capsid protein

Timeline for Species Human immunodeficiency virus type 1 [TaxId:11676] from a.73.1.1 HIV-1 capsid protein:

Species Human immunodeficiency virus type 1 [TaxId:11676] from a.73.1.1 HIV-1 capsid protein first appeared (with stable ids) in SCOP 1.55
Species Human immunodeficiency virus type 1 [TaxId:11676] from a.73.1.1 HIV-1 capsid protein appears in SCOPe 2.05
Species Human immunodeficiency virus type 1 [TaxId:11676] from a.73.1.1 HIV-1 capsid protein appears in SCOPe 2.07
Species Human immunodeficiency virus type 1 [TaxId:11676] from a.73.1.1 HIV-1 capsid protein appears in the current release, SCOPe 2.08