Lineage for Species: Human immunodeficiency virus type 1 [TaxId: 11676]

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2326304Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
    core: 5 helices; bundle
  4. 2326305Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families) (S)
  5. 2326306Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 protein domains)
  6. 2326345Protein HIV-1 capsid protein [47945] (1 species)
  7. 2326346Species Human immunodeficiency virus type 1 [TaxId:11676] [47946] (50 PDB entries)

PDB entries in Species: Human immunodeficiency virus type 1 [TaxId: 11676]:

  1. Domain(s) for 1afv:
    1. 2326424Domain d1afva_: 1afv A: [18324]
      Other proteins in same PDB: d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl1, d1afvl2, d1afvm1, d1afvm2
      complexed with pb
    2. 2326425Domain d1afvb_: 1afv B: [18325]
      Other proteins in same PDB: d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl1, d1afvl2, d1afvm1, d1afvm2
      complexed with pb
  2. Domain(s) for 1ak4:
    1. 2326405Domain d1ak4c_: 1ak4 C: [18321]
      Other proteins in same PDB: d1ak4a_, d1ak4b_
    2. 2326406Domain d1ak4d_: 1ak4 D: [18322]
      Other proteins in same PDB: d1ak4a_, d1ak4b_
  3. Domain(s) for 1e6j:
  4. Domain(s) for 1gwp:
  5. Domain(s) for 1l6n:
  6. Domain(s) for 1m9c:
    1. 2326378Domain d1m9cc_: 1m9c C: [84888]
      Other proteins in same PDB: d1m9ca_, d1m9cb_
    2. 2326379Domain d1m9cd_: 1m9c D: [84889]
      Other proteins in same PDB: d1m9ca_, d1m9cb_
  7. Domain(s) for 1m9d:
    1. 2326370Domain d1m9dc_: 1m9d C: [84892]
      Other proteins in same PDB: d1m9da_, d1m9db_
    2. 2326371Domain d1m9dd_: 1m9d D: [84893]
      Other proteins in same PDB: d1m9da_, d1m9db_
  8. Domain(s) for 1m9e:
    1. 2326357Domain d1m9ec_: 1m9e C: [84896]
      Other proteins in same PDB: d1m9ea_, d1m9eb_
    2. 2326358Domain d1m9ed_: 1m9e D: [84897]
      Other proteins in same PDB: d1m9ea_, d1m9eb_
  9. Domain(s) for 1m9f:
    1. 2326349Domain d1m9fc_: 1m9f C: [84900]
      Other proteins in same PDB: d1m9fa_, d1m9fb_
    2. 2326350Domain d1m9fd_: 1m9f D: [84901]
      Other proteins in same PDB: d1m9fa_, d1m9fb_
  10. Domain(s) for 1m9x:
    1. 2326351Domain d1m9xc_: 1m9x C: [84907]
      Other proteins in same PDB: d1m9xa_, d1m9xb_, d1m9xe_, d1m9xf_
    2. 2326352Domain d1m9xd_: 1m9x D: [84908]
      Other proteins in same PDB: d1m9xa_, d1m9xb_, d1m9xe_, d1m9xf_
    3. 2326353Domain d1m9xg_: 1m9x G: [84911]
      Other proteins in same PDB: d1m9xa_, d1m9xb_, d1m9xe_, d1m9xf_
    4. 2326354Domain d1m9xh_: 1m9x H: [84912]
      Other proteins in same PDB: d1m9xa_, d1m9xb_, d1m9xe_, d1m9xf_
  11. Domain(s) for 1m9y:
    1. 2326366Domain d1m9yc_: 1m9y C: [84915]
      Other proteins in same PDB: d1m9ya_, d1m9yb_, d1m9ye_, d1m9yf_
    2. 2326367Domain d1m9yd_: 1m9y D: [84916]
      Other proteins in same PDB: d1m9ya_, d1m9yb_, d1m9ye_, d1m9yf_
    3. 2326368Domain d1m9yg_: 1m9y G: [84919]
      Other proteins in same PDB: d1m9ya_, d1m9yb_, d1m9ye_, d1m9yf_
    4. 2326369Domain d1m9yh_: 1m9y H: [84920]
      Other proteins in same PDB: d1m9ya_, d1m9yb_, d1m9ye_, d1m9yf_
  12. Domain(s) for 2gol:
    1. 2326387Domain d2golb_: 2gol B: [135439]
      Other proteins in same PDB: d2gola_
      automated match to d1afva_
      complexed with so4
    2. 2326388Domain d2gold_: 2gol D: [135440]
      Other proteins in same PDB: d2gola_
      automated match to d1afva_
      complexed with so4
  13. Domain(s) for 2gon:
    1. 2326374Domain d2gona_: 2gon A: [164784]
      automated match to d1afva_
      complexed with flc
    2. 2326375Domain d2gonb_: 2gon B: [164785]
      automated match to d1afva_
      complexed with flc
    3. 2326376Domain d2gonc_: 2gon C: [164786]
      automated match to d1afva_
      complexed with flc
    4. 2326377Domain d2gond_: 2gon D: [164787]
      automated match to d1afva_
      complexed with flc
  14. Domain(s) for 2jpr:
  15. Domain(s) for 2m8l:
    1. 2326435Domain d2m8la1: 2m8l A:1-147 [243140]
      Other proteins in same PDB: d2m8la2, d2m8lb2
      automated match to d3ntea1
    2. 2326436Domain d2m8lb1: 2m8l B:1-147 [243142]
      Other proteins in same PDB: d2m8la2, d2m8lb2
      automated match to d3ntea1
  16. Domain(s) for 2m8n:
  17. Domain(s) for 2m8p:
  18. Domain(s) for 2pwm:
    1. 2326392Domain d2pwma_: 2pwm A: [167302]
      automated match to d1afva_
      complexed with cl
    2. 2326393Domain d2pwmb_: 2pwm B: [167303]
      automated match to d1afva_
      complexed with cl
    3. 2326394Domain d2pwmc_: 2pwm C: [167304]
      automated match to d1afva_
      complexed with cl
    4. 2326395Domain d2pwmd_: 2pwm D: [167305]
      automated match to d1afva_
      complexed with cl
    5. 2326396Domain d2pwme_: 2pwm E: [167306]
      automated match to d1afva_
      complexed with cl
    6. 2326397Domain d2pwmf_: 2pwm F: [167307]
      automated match to d1afva_
      complexed with cl
    7. 2326398Domain d2pwmg_: 2pwm G: [167308]
      automated match to d1afva_
      complexed with cl
    8. 2326399Domain d2pwmh_: 2pwm H: [167309]
      automated match to d1afva_
      complexed with cl
  19. Domain(s) for 2pwo:
    1. 2326359Domain d2pwoa_: 2pwo A: [167310]
      automated match to d1afva_
      complexed with cl
    2. 2326360Domain d2pwob_: 2pwo B: [167311]
      automated match to d1afva_
      complexed with cl
    3. 2326361Domain d2pwoc_: 2pwo C: [167312]
      automated match to d1afva_
      complexed with cl
    4. 2326362Domain d2pwod_: 2pwo D: [167313]
      automated match to d1afva_
      complexed with cl
  20. Domain(s) for 3dik:
  21. Domain(s) for 4dga:
    1. 2326372Domain d4dgac_: 4dga C: [196071]
      Other proteins in same PDB: d4dgaa_, d4dgab_
      automated match to d1m9dc_
    2. 2326373Domain d4dgad_: 4dga D: [196072]
      Other proteins in same PDB: d4dgaa_, d4dgab_
      automated match to d1m9dc_
  22. Domain(s) for 4dge:
    1. 2326380Domain d4dgec_: 4dge C: [219749]
      Other proteins in same PDB: d4dgea_, d4dgeb_
      automated match to d4dgac_
      mutant
    2. 2326381Domain d4dged_: 4dge D: [219750]
      Other proteins in same PDB: d4dgea_, d4dgeb_
      automated match to d4dgac_
      mutant
  23. Domain(s) for 4e91:
    1. 2326355Domain d4e91a_: 4e91 A: [197294]
      automated match to d1afva_
      complexed with 0oe, 0of, iod
    2. 2326356Domain d4e91b_: 4e91 B: [197293]
      automated match to d1afva_
      complexed with 0oe, 0of, iod
  24. Domain(s) for 4e92:
    1. 2326363Domain d4e92a_: 4e92 A: [220378]
      automated match to d1m9cc_
      complexed with 0oe, 0og
    2. 2326364Domain d4e92b_: 4e92 B: [220379]
      automated match to d1m9cc_
      complexed with 0oe, 0og
  25. Domain(s) for 4inb:
  26. Domain(s) for 4j93:
  27. Domain(s) for 4lqw:
    1. 2326385Domain d4lqwc_: 4lqw C: [224747]
      Other proteins in same PDB: d4lqwa1, d4lqwa2, d4lqwb1, d4lqwb2
      automated match to d1m9cc_
    2. 2326386Domain d4lqwd_: 4lqw D: [224748]
      Other proteins in same PDB: d4lqwa1, d4lqwa2, d4lqwb1, d4lqwb2
      automated match to d1m9cc_
  28. Domain(s) for 4nx4:
  29. Domain(s) for 4qnb:
  30. Domain(s) for 4u0e:
  31. Domain(s) for 4u0f:
  32. Domain(s) for 4wym:
    1. 2326409Domain d4wyma1: 4wym A:1-147 [262158]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    2. 2326410Domain d4wymb1: 4wym B:1-147 [262165]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    3. 2326411Domain d4wymc1: 4wym C:1-147 [262163]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    4. 2326412Domain d4wymd1: 4wym D:1-147 [262160]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    5. 2326413Domain d4wyme1: 4wym E:1-147 [262155]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    6. 2326414Domain d4wymf1: 4wym F:1-147 [262154]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    7. 2326415Domain d4wymg1: 4wym G:1-147 [262166]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    8. 2326416Domain d4wymh1: 4wym H:1-147 [262172]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    9. 2326417Domain d4wymi1: 4wym I:1-147 [262174]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    10. 2326418Domain d4wymj1: 4wym J:1-147 [262162]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    11. 2326419Domain d4wymk1: 4wym K:1-147 [262164]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
    12. 2326420Domain d4wyml1: 4wym L:1-147 [262175]
      Other proteins in same PDB: d4wyma2, d4wymb2, d4wymc2, d4wymd2, d4wyme2, d4wymf2, d4wymg2, d4wymh2, d4wymj2, d4wymk2
      automated match to d2m8lb1
  33. Domain(s) for 4xfx:
  34. Domain(s) for 4xfy:
  35. Domain(s) for 4xfz:
  36. Domain(s) for 4xro:
  37. Domain(s) for 4xrq:
  38. Domain(s) for 5hgk:
    1. 2326383Domain d5hgka_: 5hgk A: [321037]
      automated match to d1m9cc_
      complexed with cl
    2. 2326384Domain d5hgkb_: 5hgk B: [321039]
      automated match to d1m9cc_
      complexed with cl
  39. Domain(s) for 5hgl:
    1. 2326426Domain d5hgla1: 5hgl A:1-147 [321005]
      Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
      automated match to d4xfxa1
      complexed with 1b0, cl
    2. 2326427Domain d5hglb1: 5hgl B:1-147 [321021]
      Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
      automated match to d4xfxa1
      complexed with 1b0, cl
    3. 2326428Domain d5hglc1: 5hgl C:1-147 [321035]
      Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
      automated match to d4xfxa1
      complexed with 1b0, cl
    4. 2326429Domain d5hgld1: 5hgl D:1-147 [321013]
      Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
      automated match to d4xfxa1
      complexed with 1b0, cl
    5. 2326430Domain d5hgle1: 5hgl E:1-147 [321019]
      Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
      automated match to d4xfxa1
      complexed with 1b0, cl
    6. 2326431Domain d5hglf1: 5hgl F:1-147 [321017]
      Other proteins in same PDB: d5hgla2, d5hglb2, d5hglc2, d5hgld2, d5hgle2, d5hglf2
      automated match to d4xfxa1
      complexed with 1b0, cl
  40. Domain(s) for 5hgm:
  41. Domain(s) for 5hgn:
  42. Domain(s) for 5hgo:
  43. Domain(s) for 5hgp:
  44. Domain(s) for 5jpa:
  45. Domain(s) for 5w4o:
  46. Domain(s) for 5w4p:
  47. Domain(s) for 5w4q:
  48. Domain(s) for 6bht:
    1. 3055351Domain d6bhta1: 6bht A:1-147 [355413]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    2. 3055370Domain d6bhtb1: 6bht B:1-147 [355432]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    3. 3055373Domain d6bhtj1: 6bht J:1-147 [355435]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    4. 3055377Domain d6bhtg1: 6bht G:1-147 [355439]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    5. 3055380Domain d6bhtk1: 6bht K:1-147 [355442]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    6. 3055384Domain d6bhtc1: 6bht C:1-147 [355446]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    7. 3055386Domain d6bhtf1: 6bht F:1-147 [355448]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    8. 3055506Domain d6bhti1: 6bht I:1-147 [355568]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    9. 3055509Domain d6bhtl1: 6bht L:1-147 [355571]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    10. 3055512Domain d6bhte1: 6bht E:1-147 [355574]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    11. 3055515Domain d6bhth1: 6bht H:1-147 [355577]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
    12. 3055605Domain d6bhtd1: 6bht D:1-147 [355667]
      Other proteins in same PDB: d6bhta2, d6bhtb2, d6bhtc2, d6bhtd2, d6bhte2, d6bhtf2, d6bhtg2, d6bhth2, d6bhti2, d6bhtj2, d6bhtk2, d6bhtl2
      automated match to d4xfxa1
      complexed with ihp
  49. Domain(s) for 6es8:
  50. Domain(s) for 6h09:

More info for Species Human immunodeficiency virus type 1 [TaxId:11676] from a.73.1.1 HIV-1 capsid protein

Timeline for Species Human immunodeficiency virus type 1 [TaxId:11676] from a.73.1.1 HIV-1 capsid protein: