SCOPe 2.07: Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain

Lineage for Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
   core: 5 helices; bundle

4. Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families)

5. Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 proteins)

Proteins:

1. AKV capsid [116949] (2 species)

   1. Species AKV murine leukemia virus [TaxId:11791] [116950] (1 PDB entry)
      Uniprot P03336 215-345 # fragment of the core shell protein p30 (215-477)

   2. Species Murine leukemia virus [TaxId:11786] [188334] (1 PDB entry)

2. EIAV capsid protein p26 [47947] (1 species)

   • Species Equine infectious anemia virus [TaxId:11665] [47948] (2 PDB entries)

3. HIV-1 capsid protein [47945] (1 species)

   • Species Human immunodeficiency virus type 1 [TaxId:11676] [47946] (70 PDB entries)

4. HTLV-I capsid protein [47949] (1 species)

   • Species Human T-cell leukemia virus type 1 [TaxId:11908] [47950] (2 PDB entries)

5. RSV capsid protein [47951] (1 species)

   • Species Rous sarcoma virus [TaxId:11886] [47952] (3 PDB entries)

6. automated matches [190369] (8 species)
   not a true protein

   1. Species Human immunodeficiency virus 1 [TaxId:11676] [187207] (7 PDB entries)

   2. Species Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId:11698] [232370] (2 PDB entries)

   3. Species Human immunodeficiency virus type 1 group m subtype b (isolate ny5) [TaxId:11698] [355560] (1 PDB entry)

   4. Species Human immunodeficiency virus type 1 [TaxId:11698] [232915] (1 PDB entry)

   5. Species Human immunodeficiency virus type 2 (isolate d194) [TaxId:11713] [189055] (2 PDB entries)

   6. Species Murine leukemia virus [TaxId:11786] [189823] (1 PDB entry)

   7. Species Rous sarcoma virus (strain prague c) [TaxId:11888] [403733] (1 PDB entry)

   8. Species Simian immunodeficiency virus [TaxId:11723] [193087] (1 PDB entry)

More info for Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain

Timeline for Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain:

• Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain first appeared (with stable ids) in SCOP 1.55
  
• Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain appears in SCOPe 2.06
  
• Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain appears in the current release, SCOPe 2.08