Lineage for Protein: NAD+-dependent DNA ligase, domain 3
- Root: SCOPe 2.07
Class a: All alpha proteins [46456] (289 folds) 
Fold a.60: SAM domain-like [47768] (16 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.2: RuvA domain 2-like [47781] (7 families) 
duplication: contains two helix-hairpin-helix (HhH) motifs
Family a.60.2.2: NAD+-dependent DNA ligase, domain 3 [47786] (1 protein) Protein NAD+-dependent DNA ligase, domain 3 [47787] (1 species)
duplication: consists of two RuvA-like domains (four HhH motifs); also contains a zinc-finger subdomain
Species:
Thermus filiformis [TaxId:276] [47788] (3 PDB entries) - Domains for 1dgs:
Domain d1dgsa1: 1dgs A:401-581 [17963]
Other proteins in same PDB: d1dgsa2, d1dgsa3, d1dgsb2, d1dgsb3
protein/DNA complex; complexed with amp, zn
Domain d1dgsb1: 1dgs B:2401-2581 [17964]
Other proteins in same PDB: d1dgsa2, d1dgsa3, d1dgsb2, d1dgsb3
protein/DNA complex; complexed with amp, zn
- Domain for 1dgt:
Domain d1dgta6: 1dgt A:401-581 [302334]
Other proteins in same PDB: d1dgta4, d1dgta5
automated match to d1dgsa1
protein/DNA complex; complexed with amp, zn
- Domains for 1v9p:
Domain d1v9pa1: 1v9p A:404-584 [100544]
Other proteins in same PDB: d1v9pa2, d1v9pa3, d1v9pb2, d1v9pb3
complexed with amp, zn
Domain d1v9pb1: 1v9p B:2404-2584 [100547]
Other proteins in same PDB: d1v9pa2, d1v9pa3, d1v9pb2, d1v9pb3
complexed with amp, zn
- Domains for 1dgs:
More info for Protein NAD+-dependent DNA ligase, domain 3 from a.60.2.2: NAD+-dependent DNA ligase, domain 3
Timeline for Protein NAD+-dependent DNA ligase, domain 3 from a.60.2.2: NAD+-dependent DNA ligase, domain 3:
- Protein NAD+-dependent DNA ligase, domain 3 from a.60.2.2: NAD+-dependent DNA ligase, domain 3 first appeared (with stable ids) in SCOP 1.55
- Protein NAD+-dependent DNA ligase, domain 3 from a.60.2.2: NAD+-dependent DNA ligase, domain 3 appears in SCOPe 2.06
- Protein NAD+-dependent DNA ligase, domain 3 from a.60.2.2: NAD+-dependent DNA ligase, domain 3 appears in the current release, SCOPe 2.08