Lineage for Protein: Calpain small (regulatory) subunit (domain VI)

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.39: EF Hand-like [47472] (4 superfamilies)
    core: 4 helices; array of 2 hairpins, opened
  4. Superfamily a.39.1: EF-hand [47473] (12 families) (S)
    Duplication: consists of two EF-hand units: each is made of two helices connected with calcium-binding loop
  5. Family a.39.1.8: Penta-EF-hand proteins [63550] (7 proteins)
  6. Protein Calpain small (regulatory) subunit (domain VI) [47552] (3 species)

Species:

  1. Human (Homo sapiens) [TaxId:9606] [47553] (10 PDB entries)
    1. Domain for 1dkv:
    2. Domain for 1kfu:
    3. Domain for 1kfx:
    4. Domains for 4phj:
      1. Domain d4phja_: 4phj A: [258978]
        automated match to d1kfxs_
        complexed with ca
      2. Domain d4phjb_: 4phj B: [259088]
        automated match to d1kfxs_
        complexed with ca
    5. Domains for 4phk:
      1. Domain d4phka_: 4phk A: [259696]
        automated match to d1kfxs_
        complexed with 2ub, ca
      2. Domain d4phkb_: 4phk B: [259927]
        automated match to d1kfxs_
        complexed with 2ub, ca
    6. Domains for 4phm:
      1. Domain d4phma_: 4phm A: [259447]
        automated match to d1kfxs_
        complexed with 2ud, ca
      2. Domain d4phmb_: 4phm B: [263483]
        automated match to d1kfxs_
        complexed with 2ud, ca
    7. Domains for 4wq2:
      1. Domain d4wq2a_: 4wq2 A: [276602]
        automated match to d1kfxs_
        complexed with 3su, ca, edo
      2. Domain d4wq2b_: 4wq2 B: [276603]
        automated match to d1kfxs_
        complexed with 3su, ca, edo
    8. Domains for 4wq3:
      1. Domain d4wq3a_: 4wq3 A: [276601]
        automated match to d1kfxs_
        complexed with 3su, ca
      2. Domain d4wq3b_: 4wq3 B: [276600]
        automated match to d1kfxs_
        complexed with 3su, ca
    9. Domains for 5d69:
      1. Domain d5d69a_: 5d69 A: [276547]
        automated match to d1kfxs_
        complexed with 57t, ca, so4
      2. Domain d5d69b_: 5d69 B: [276548]
        automated match to d1kfxs_
        complexed with 57t, ca, so4
    10. Domains for 6qlb:
      1. Domain d6qlba_: 6qlb A: [380130]
        Other proteins in same PDB: d6qlbe1, d6qlbe2, d6qlbf1, d6qlbf2, d6qlbg1, d6qlbg2, d6qlbh1, d6qlbh2
        automated match to d1df0b_
        protein/DNA complex; protein/RNA complex; complexed with ca, edo, gun, p4g
      2. Domain d6qlbb_: 6qlb B: [380014]
        Other proteins in same PDB: d6qlbe1, d6qlbe2, d6qlbf1, d6qlbf2, d6qlbg1, d6qlbg2, d6qlbh1, d6qlbh2
        automated match to d1df0b_
        protein/DNA complex; protein/RNA complex; complexed with ca, edo, gun, p4g
      3. Domain d6qlbc_: 6qlb C: [380067]
        Other proteins in same PDB: d6qlbe1, d6qlbe2, d6qlbf1, d6qlbf2, d6qlbg1, d6qlbg2, d6qlbh1, d6qlbh2
        automated match to d1df0b_
        protein/DNA complex; protein/RNA complex; complexed with ca, edo, gun, p4g
      4. Domain d6qlbd_: 6qlb D: [379988]
        Other proteins in same PDB: d6qlbe1, d6qlbe2, d6qlbf1, d6qlbf2, d6qlbg1, d6qlbg2, d6qlbh1, d6qlbh2
        automated match to d1df0b_
        protein/DNA complex; protein/RNA complex; complexed with ca, edo, gun, p4g
  2. Norway rat (Rattus norvegicus) [TaxId:10116] [47554] (8 PDB entries)
    1. Domains for 1aj5:
      1. Domain d1aj5a_: 1aj5 A: [17367]
      2. Domain d1aj5b_: 1aj5 B: [17368]
    2. Domain for 1df0:
    3. Domains for 1dvi:
      1. Domain d1dvia_: 1dvi A: [17365]
        complexed with ca
      2. Domain d1dvib_: 1dvi B: [17366]
        complexed with ca
    4. Domains for 1np8:
      1. Domain d1np8a_: 1np8 A: [92022]
        complexed with cd
      2. Domain d1np8b_: 1np8 B: [92023]
        complexed with cd
    5. Domains for 1qxp:
      1. Domain d1qxpa1: 1qxp A:710-893 [96543]
        Other proteins in same PDB: d1qxpa2, d1qxpa3, d1qxpa4, d1qxpb2, d1qxpb3, d1qxpb4
        mu-like isoform with the large and small subunits fused in a single chain
      2. Domain d1qxpb1: 1qxp B:710-893 [96547]
        Other proteins in same PDB: d1qxpa2, d1qxpa3, d1qxpa4, d1qxpb2, d1qxpb3, d1qxpb4
        mu-like isoform with the large and small subunits fused in a single chain
    6. Domain for 1u5i:
    7. Domain for 3bow:
    8. Domain for 3df0:
  3. Pig (Sus scrofa) [TaxId:9823] [47555] (7 PDB entries)
    1. Domains for 1alv:
      1. Domain d1alva_: 1alv A: [17370]
        complexed with ca
      2. Domain d1alvb_: 1alv B: [17371]
        complexed with ca
    2. Domains for 1alw:
      1. Domain d1alwa_: 1alw A: [17372]
        complexed with ca, isa
      2. Domain d1alwb_: 1alw B: [17373]
        complexed with ca, isa
    3. Domains for 1nx0:
      1. Domain d1nx0a_: 1nx0 A: [92277]
        complexed with calpastatin inhibitory domain c (dic) and peptide inhibitor
        complexed with ca
      2. Domain d1nx0b_: 1nx0 B: [92278]
        complexed with calpastatin inhibitory domain c (dic) and peptide inhibitor
        complexed with ca
    4. Domains for 1nx1:
      1. Domain d1nx1a_: 1nx1 A: [92279]
        complexed with calpastatin dic
        complexed with ca
      2. Domain d1nx1b_: 1nx1 B: [92280]
        complexed with calpastatin dic
        complexed with ca
    5. Domain for 1nx2:
    6. Domain for 1nx3:
    7. Domains for 4phn:
      1. Domain d4phna_: 4phn A: [258980]
        automated match to d1alva_
        complexed with ca
      2. Domain d4phnb_: 4phn B: [258979]
        automated match to d1alva_
        complexed with ca

More info for Protein Calpain small (regulatory) subunit (domain VI) from a.39.1.8: Penta-EF-hand proteins

Timeline for Protein Calpain small (regulatory) subunit (domain VI) from a.39.1.8: Penta-EF-hand proteins: