Lineage for Protein: Calmodulin

  1. Root: SCOP 1.75
  2. 758332Class a: All alpha proteins [46456] (284 folds)
  3. 768455Fold a.39: EF Hand-like [47472] (4 superfamilies)
    core: 4 helices; array of 2 hairpins, opened
  4. 768456Superfamily a.39.1: EF-hand [47473] (11 families) (S)
    Duplication: consists of two EF-hand units: each is made of two helices connected with calcium-binding loop
  5. 768689Family a.39.1.5: Calmodulin-like [47502] (23 proteins)
    Duplication: made with two pairs of EF-hands
  6. 768749Protein Calmodulin [47516] (11 species)

Species:

  1. 768750African frog (Xenopus laevis) [TaxId:8355] [47521] (12 PDB entries)
    1. Domain for 1cfc:
    2. Domain for 1cfd:
    3. Domain for 1cff:
      • 768763Domain d1cffa_: 1cff A: [17295]
        complex with a binding peptide of the human Ca2+-pump
        complexed with ca
    4. Domain for 1ckk:
      • 768762Domain d1ckka_: 1ckk A: [17294]
        complex with a fragment of the rat ca2+/calmodulin dependent protein kinase
        complexed with ca
    5. Domain for 1dmo:
    6. Domain for 1f70:
    7. Domain for 1f71:
    8. Domain for 1iq5:
      • 768751Domain d1iq5a_: 1iq5 A: [62643]
        complex with a ca2+/calmodulin dependent kinase kinase fragment
        complexed with ca
    9. Domain for 1mux:
    10. Domain for 1nwd:
      • 768756Domain d1nwda_: 1nwd A: [86297]
        complex with the C-terminal fragment of glutamate decarboxylase, chains B and C
        complexed with ca
    11. Domains for 2ggm:
      1. 768752Domain d2ggma1: 2ggm A:24-166 [135152]
        automatically matched to d1cfc__
        complexed with ca
      2. 768753Domain d2ggmb1: 2ggm B:25-166 [135153]
        automatically matched to d1cfc__
        complexed with ca
    12. Domain for 2k3s:
  2. 768764Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [89052] (3 PDB entries)
    1. Domain for 1f54:
    2. Domain for 1f55:
      • 768767Domain d1f55a_: 1f55 A: [83245]
        N-terminal domain, calcium bound form
        complexed with ca
    3. Domain for 1lkj:
  3. 768768Chicken (Gallus gallus) [TaxId:9031] [47520] (2 PDB entries)
    mutant with a two residue deletion in the central helix
    1. Domain for 1ahr:
    2. Domain for 2vb6:
  4. 768771Ciliate (Paramecium tetraurelia) [TaxId:5888] [47523] (4 PDB entries)
    Uniprot Q42478
    1. Domain for 1clm:
    2. Domain for 1exr:
    3. Domains for 1n0y:
      1. 768774Domain d1n0ya_: 1n0y A: [91536]
      2. 768775Domain d1n0yb_: 1n0y B: [91537]
        complexed with act, cac, pb
    4. Domain for 1osa:
  5. 768777Cow (Bos taurus) [TaxId:9913] [47518] (25 PDB entries)
    Uniprot P62157
    1. Domain for 1a29:
      • 768794Domain d1a29a_: 1a29 A: [17276]
        trifluoperazine 1:2 complex
        complexed with ca, tfp
    2. Domain for 1ak8:
    3. Domains for 1cdl:
      1. 768790Domain d1cdla_: 1cdl A: [17272]
        complexed with calmodulin-binding peptide from smooth muscle myosin light chain kinase
      2. 768791Domain d1cdlb_: 1cdl B: [17273]
        complexed with calmodulin-binding peptide from smooth muscle myosin light chain kinase
      3. 768792Domain d1cdlc_: 1cdl C: [17274]
        complexed with calmodulin-binding peptide from smooth muscle myosin light chain kinase
      4. 768793Domain d1cdld_: 1cdl D: [17275]
        complexed with calmodulin-binding peptide from smooth muscle myosin light chain kinase
        complexed with ca
    4. Domain for 1cdm:
      • 768783Domain d1cdma_: 1cdm A: [17270]
        complexed with calmodulin-binding domain of calmodulin-dependent protein kinase
        complexed with ca
    5. Domain for 1cm1:
    6. Domains for 1cm4:
      1. 768784Domain d1cm4a_: 1cm4 A: [17266]
      2. 768785Domain d1cm4c_: 1cm4 C: [17267]
      3. 768786Domain d1cm4e_: 1cm4 E: [17268]
      4. 768787Domain d1cm4g_: 1cm4 G: [17269]
        complexed with ca
    7. Domain for 1cmf:
    8. Domain for 1cmg:
    9. Domain for 1deg:
    10. Domain for 1fw4:
    11. Domain for 1j7o:
    12. Domain for 1j7p:
    13. Domain for 1lin:
    14. Domain for 1prw:
    15. Domain for 1qiv:
    16. Domains for 1qiw:
      1. 768795Domain d1qiwa_: 1qiw A: [17277]
      2. 768796Domain d1qiwb_: 1qiw B: [17278]
        complexed with ca, dpd
    17. Domains for 1up5:
      1. 768781Domain d1up5a1: 1up5 A:4-75 [119696]
        automatically matched to d1ak8__
        complexed with ca, m3l
      2. 768782Domain d1up5b1: 1up5 B:4-75 [119697]
        automatically matched to d1ak8__
        complexed with ca, m3l
    18. Domain for 1xa5:
    19. Domains for 1xfu:
      1. 768831Domain d1xfuo1: 1xfu O:3-75 [121937]
        automatically matched to d1ak8__
        complexed with ca, mg; mutant
      2. 768832Domain d1xfup1: 1xfu P:3-75 [121938]
        automatically matched to d1ak8__
        complexed with ca, mg; mutant
      3. 768833Domain d1xfuq1: 1xfu Q:3-75 [121939]
        automatically matched to d1ak8__
        complexed with ca, mg; mutant
      4. 768834Domain d1xfur1: 1xfu R:3-75 [121940]
        automatically matched to d1ak8__
        complexed with ca, mg; mutant
      5. 768835Domain d1xfus1: 1xfu S:3-75 [121941]
        automatically matched to d1ak8__
        complexed with ca, mg; mutant
      6. 768836Domain d1xfut1: 1xfu T:3-75 [121942]
        automatically matched to d1ak8__
        complexed with ca, mg; mutant
    20. Domains for 1xfv:
      1. 768825Domain d1xfvo1: 1xfv O:3-75 [121943]
        automatically matched to d1ak8__
        complexed with 3at, ca, mg
      2. 768826Domain d1xfvp1: 1xfv P:3-75 [121944]
        automatically matched to d1ak8__
        complexed with 3at, ca, mg
      3. 768827Domain d1xfvq1: 1xfv Q:3-75 [121945]
        automatically matched to d1ak8__
        complexed with 3at, ca, mg
      4. 768828Domain d1xfvr1: 1xfv R:3-75 [121946]
        automatically matched to d1ak8__
        complexed with 3at, ca, mg
      5. 768829Domain d1xfvs1: 1xfv S:3-75 [121947]
        automatically matched to d1ak8__
        complexed with 3at, ca, mg
      6. 768830Domain d1xfvt1: 1xfv T:3-75 [121948]
        automatically matched to d1ak8__
        complexed with 3at, ca, mg
    21. Domains for 1xfw:
      1. 768813Domain d1xfwo1: 1xfw O:3-75 [121949]
        automatically matched to d1ak8__
        complexed with ca, cmp, mg
      2. 768814Domain d1xfwp1: 1xfw P:3-75 [121950]
        automatically matched to d1ak8__
        complexed with ca, cmp, mg
      3. 768815Domain d1xfwq1: 1xfw Q:3-75 [121951]
        automatically matched to d1ak8__
        complexed with ca, cmp, mg
      4. 768816Domain d1xfwr1: 1xfw R:3-75 [121952]
        automatically matched to d1ak8__
        complexed with ca, cmp, mg
      5. 768817Domain d1xfws1: 1xfw S:3-75 [121953]
        automatically matched to d1ak8__
        complexed with ca, cmp, mg
      6. 768818Domain d1xfwt1: 1xfw T:3-75 [121954]
        automatically matched to d1ak8__
        complexed with ca, cmp, mg
    22. Domains for 1xfx:
      1. 768800Domain d1xfxo1: 1xfx O:3-75 [121955]
        automatically matched to d1ak8__
        complexed with ca, mg
      2. 768801Domain d1xfxp1: 1xfx P:3-75 [121956]
        automatically matched to d1ak8__
        complexed with ca, mg
      3. 768802Domain d1xfxq1: 1xfx Q:3-75 [121957]
        automatically matched to d1ak8__
        complexed with ca, mg
      4. 768803Domain d1xfxr1: 1xfx R:3-75 [121958]
        automatically matched to d1ak8__
        complexed with ca, mg
      5. 768804Domain d1xfxs1: 1xfx S:3-75 [121959]
        automatically matched to d1ak8__
        complexed with ca, mg
      6. 768805Domain d1xfxt1: 1xfx T:3-75 [121960]
        automatically matched to d1ak8__
        complexed with ca, mg
    23. Domains for 1xfy:
      1. 768819Domain d1xfyo1: 1xfy O:3-75 [121961]
        automatically matched to d1ak8__
        complexed with ca, mg
      2. 768820Domain d1xfyp1: 1xfy P:3-75 [121962]
        automatically matched to d1ak8__
        complexed with ca, mg
      3. 768821Domain d1xfyq1: 1xfy Q:3-75 [121963]
        automatically matched to d1ak8__
        complexed with ca, mg
      4. 768822Domain d1xfyr1: 1xfy R:3-75 [121964]
        automatically matched to d1ak8__
        complexed with ca, mg
      5. 768823Domain d1xfys1: 1xfy S:3-75 [121965]
        automatically matched to d1ak8__
        complexed with ca, mg
      6. 768824Domain d1xfyt1: 1xfy T:3-75 [121966]
        automatically matched to d1ak8__
        complexed with ca, mg
    24. Domains for 1xfz:
      1. 768806Domain d1xfzo1: 1xfz O:3-75 [121967]
        automatically matched to d1ak8__
        complexed with ca, mg
      2. 768807Domain d1xfzp1: 1xfz P:3-75 [121968]
        automatically matched to d1ak8__
        complexed with ca, mg
      3. 768808Domain d1xfzq1: 1xfz Q:3-75 [121969]
        automatically matched to d1ak8__
        complexed with ca, mg
      4. 768809Domain d1xfzr1: 1xfz R:3-75 [121970]
        automatically matched to d1ak8__
        complexed with ca, mg
      5. 768810Domain d1xfzs1: 1xfz S:3-75 [121971]
        automatically matched to d1ak8__
        complexed with ca, mg
      6. 768811Domain d1xfzt1: 1xfz T:3-75 [121972]
        automatically matched to d1ak8__
        complexed with ca, mg
    25. Domain for 2fce:
  6. 768841Drosophila melanogaster [TaxId:7227] [47522] (6 PDB entries)
    1. Domains for 1mxe:
      1. 768842Domain d1mxea_: 1mxe A: [79644]
        complex with the target sequence of Calmodulin-dependent protein kinase I (1a06), chains E and F
      2. 768843Domain d1mxeb_: 1mxe B: [79645]
        complex with the target sequence of Calmodulin-dependent protein kinase I (1a06), chains E and F
        complexed with ca
    2. Domain for 2bbm:
    3. Domain for 2bbn:
    4. Domain for 2bkh:
    5. Domain for 2vas:
    6. Domain for 4cln:
  7. 768849Human (Homo sapiens) [TaxId:9606] [47517] (38 PDB entries)
    Uniprot P02593
    1. Domain for 1cll:
    2. Domain for 1ctr:
      • 768883Domain d1ctra_: 1ctr A: [17264]
        trifluoperazine 1:1 complex
        complexed with ca, tfp
    3. Domain for 1iwq:
      • 768863Domain d1iwqa_: 1iwq A: [83761]
        complexed with Marcks calmodulin binding domain peptide, chain B
        complexed with ca
    4. Domains for 1k90:
      1. 768879Domain d1k90d_: 1k90 D: [68322]
        Other proteins in same PDB: d1k90a_, d1k90b_, d1k90c_
      2. 768880Domain d1k90e_: 1k90 E: [68323]
        Other proteins in same PDB: d1k90a_, d1k90b_, d1k90c_
      3. 768881Domain d1k90f_: 1k90 F: [68324]
        Other proteins in same PDB: d1k90a_, d1k90b_, d1k90c_
        complexed with 3at, ca, yb
    5. Domains for 1k93:
      1. 768888Domain d1k93d_: 1k93 D: [68330]
        Other proteins in same PDB: d1k93a_, d1k93b_, d1k93c_
      2. 768889Domain d1k93e_: 1k93 E: [68331]
        Other proteins in same PDB: d1k93a_, d1k93b_, d1k93c_
      3. 768890Domain d1k93f_: 1k93 F: [68332]
        Other proteins in same PDB: d1k93a_, d1k93b_, d1k93c_
        complexed with ca, so4
    6. Domain for 1l7z:
      • 768872Domain d1l7za_: 1l7z A: [91054]
        complexed with a myristoylated peptide, chain B
        complexed with ca, myr
    7. Domains for 1lvc:
      1. 768897Domain d1lvcd_: 1lvc D: [78239]
        Other proteins in same PDB: d1lvca_, d1lvcb_, d1lvcc_
      2. 768898Domain d1lvce_: 1lvc E: [78240]
        Other proteins in same PDB: d1lvca_, d1lvcb_, d1lvcc_
      3. 768899Domain d1lvcf_: 1lvc F: [78241]
        Other proteins in same PDB: d1lvca_, d1lvcb_, d1lvcc_
        complexed with ca, dot, yb
    8. Domains for 1pk0:
      1. 768891Domain d1pk0d_: 1pk0 D: [94798]
        Other proteins in same PDB: d1pk0a_, d1pk0b_, d1pk0c_
      2. 768892Domain d1pk0e_: 1pk0 E: [94799]
        Other proteins in same PDB: d1pk0a_, d1pk0b_, d1pk0c_
      3. 768893Domain d1pk0f_: 1pk0 F: [94800]
        Other proteins in same PDB: d1pk0a_, d1pk0b_, d1pk0c_
        complexed with ca, ema, yb
    9. Domains for 1s26:
      1. 768884Domain d1s26d_: 1s26 D: [98370]
        Other proteins in same PDB: d1s26a_, d1s26b_, d1s26c_
      2. 768885Domain d1s26e_: 1s26 E: [98371]
        Other proteins in same PDB: d1s26a_, d1s26b_, d1s26c_
      3. 768886Domain d1s26f_: 1s26 F: [98372]
        Other proteins in same PDB: d1s26a_, d1s26b_, d1s26c_
        complexed with apc, ca, yb
    10. Domains for 1sk6:
      1. 768894Domain d1sk6d_: 1sk6 D: [105668]
        Other proteins in same PDB: d1sk6a_, d1sk6b_, d1sk6c_
      2. 768895Domain d1sk6e_: 1sk6 E: [105669]
        Other proteins in same PDB: d1sk6a_, d1sk6b_, d1sk6c_
      3. 768896Domain d1sk6f_: 1sk6 F: [105670]
        Other proteins in same PDB: d1sk6a_, d1sk6b_, d1sk6c_
        complexed with ca, cmp, pop, yb
    11. Domain for 1sw8:
      • 768909Domain d1sw8a_: 1sw8 A: [99022]
        N-terminal domain only
        complexed with ca; mutant
    12. Domain for 1sy9:
    13. Domain for 1wrz:
    14. Domain for 1x02:
    15. Domains for 1y0v:
      1. 768903Domain d1y0vh1: 1y0v H:5-148 [145893]
        automatically matched to d2bbma_
        complexed with ca, mg, pop
      2. 768904Domain d1y0vi1: 1y0v I:5-148 [145894]
        automatically matched to d2bbma_
        complexed with ca, mg, pop
      3. 768905Domain d1y0vj1: 1y0v J:5-148 [145895]
        automatically matched to d2bbma_
        complexed with ca, mg, pop
      4. 768906Domain d1y0vk1: 1y0v K:5-148 [145896]
        automatically matched to d2bbma_
        complexed with ca, mg, pop
      5. 768907Domain d1y0vl1: 1y0v L:5-148 [145897]
        automatically matched to d2bbma_
        complexed with ca, mg, pop
      6. 768908Domain d1y0vm1: 1y0v M:5-148 [145898]
        automatically matched to d2bbma_
        complexed with ca, mg, pop
    16. Domain for 1y6w:
    17. Domain for 1yr5:
    18. Domain for 1zuz:
    19. Domain for 2bcx:
    20. Domains for 2be6:
      1. 768859Domain d2be6a1: 2be6 A:3-146 [146136]
        automatically matched to d2bbma_
        complexed with ca, ni
      2. 768860Domain d2be6b1: 2be6 B:4-146 [146137]
        automatically matched to d2bbma_
        complexed with ca, ni
      3. 768861Domain d2be6c1: 2be6 C:4-146 [146138]
        automatically matched to d2bbma_
        complexed with ca, ni
    21. Domain for 2bki:
    22. Domains for 2dfs:
      1. 768910Domain d2dfsb1: 2dfs B:10-148 [146510]
        automatically matched to d2bbma_
      2. 768911Domain d2dfsc1: 2dfs C:8-148 [146511]
        automatically matched to d2bbma_
      3. 768912Domain d2dfsd1: 2dfs D:10-148 [146512]
        automatically matched to d2bbma_
      4. 768913Domain d2dfse1: 2dfs E:8-148 [146513]
        automatically matched to d2bbma_
      5. 768914Domain d2dfsf1: 2dfs F:10-148 [146514]
        automatically matched to d2bbma_
      6. 768915Domain d2dfsg1: 2dfs G:8-148 [146515]
        automatically matched to d2bbma_
      7. 768916Domain d2dfsn1: 2dfs N:10-148 [146516]
        automatically matched to d2bbma_
      8. 768917Domain d2dfso1: 2dfs O:8-148 [146517]
        automatically matched to d2bbma_
      9. 768918Domain d2dfsp1: 2dfs P:10-148 [146518]
        automatically matched to d2bbma_
      10. 768919Domain d2dfsq1: 2dfs Q:8-148 [146519]
        automatically matched to d2bbma_
      11. 768920Domain d2dfsr1: 2dfs R:10-148 [146520]
        automatically matched to d2bbma_
      12. 768921Domain d2dfss1: 2dfs S:8-148 [146521]
        automatically matched to d2bbma_
    23. Domain for 2f3y:
    24. Domain for 2f3z:
    25. Domain for 2fot:
    26. Domain for 2hqw:
    27. Domains for 2ix7:
      1. 768873Domain d2ix7a1: 2ix7 A:4-146 [147826]
        automatically matched to d2bbma_
        complexed with cys, so4
      2. 768874Domain d2ix7b1: 2ix7 B:4-146 [147827]
        automatically matched to d2bbma_
        complexed with cys, so4
    28. Domain for 2k0e:
    29. Domain for 2k0f:
    30. Domain for 2o5g:
    31. Domain for 2o60:
    32. Domains for 2obh:
      1. 768855Domain d2obha1: 2obh A:26-166 [148716]
        automatically matched to d2ggma1
        complexed with ace, ca
      2. 768856Domain d2obhb1: 2obh B:26-166 [148717]
        automatically matched to d2ggma1
        complexed with ace, ca
    33. Domains for 2r28:
      1. 768867Domain d2r28a1: 2r28 A:6-148 [151531]
        automatically matched to d1cfca_
        complexed with ca
      2. 768868Domain d2r28b1: 2r28 B:6-148 [151532]
        automatically matched to d1cfca_
        complexed with ca
    34. Domain for 2v01:
    35. Domain for 2v02:
    36. Domain for 2vay:
    37. Domains for 3bxk:
      1. 768876Domain d3bxka1: 3bxk A:5-145 [155716]
        automatically matched to d1cfca_
        complexed with ca, so4
      2. 768877Domain d3bxkc1: 3bxk C:5-146 [155717]
        automatically matched to d1cfca_
        complexed with ca, so4
    38. Domain for 3bxl:
  8. 768922Nematode (Caenorhabditis elegans) [TaxId:6239] [89051] (1 PDB entry)
  9. 768924Potato (Solanum tuberosum) [TaxId:4113] [109820] (1 PDB entry)
  10. 768926Rat (Rattus rattus) [TaxId:10117] [47519] (5 PDB entries)
    Uniprot P62161
    1. Domain for 1g4y:
    2. Domains for 1niw:
      1. 768928Domain d1niwa_: 1niw A: [80537]
        complexed with an endothelial nitric oxide synthase peptide, chains B, D, F and H
      2. 768929Domain d1niwc_: 1niw C: [80538]
        complexed with an endothelial nitric oxide synthase peptide, chains B, D, F and H
      3. 768930Domain d1niwe_: 1niw E: [80539]
        complexed with an endothelial nitric oxide synthase peptide, chains B, D, F and H
      4. 768931Domain d1niwg_: 1niw G: [80540]
        complexed with an endothelial nitric oxide synthase peptide, chains B, D, F and H
        complexed with ca, egl, mse, so4
    3. Domains for 1qx5:
      1. 768933Domain d1qx5b_: 1qx5 B: [104628]
        apocalmodulin; oligomer with swapped EF-hand units
      2. 768934Domain d1qx5d_: 1qx5 D: [104629]
        apocalmodulin; oligomer with swapped EF-hand units
      3. 768935Domain d1qx5i_: 1qx5 I: [104630]
        apocalmodulin; oligomer with swapped EF-hand units
      4. 768936Domain d1qx5j_: 1qx5 J: [104631]
        apocalmodulin; oligomer with swapped EF-hand units
      5. 768937Domain d1qx5k_: 1qx5 K: [104632]
        apocalmodulin; oligomer with swapped EF-hand units
      6. 768938Domain d1qx5r_: 1qx5 R: [104633]
        apocalmodulin; oligomer with swapped EF-hand units
      7. 768939Domain d1qx5t_: 1qx5 T: [104634]
        apocalmodulin; oligomer with swapped EF-hand units
      8. 768940Domain d1qx5y_: 1qx5 Y: [104635]
        apocalmodulin; oligomer with swapped EF-hand units
    4. Domains for 1qx7:
      1. 768941Domain d1qx7a_: 1qx7 A: [104636]
        apocalmodulin; oligomer with swapped EF-hand units
      2. 768942Domain d1qx7b_: 1qx7 B: [104637]
        apocalmodulin; oligomer with swapped EF-hand units
      3. 768943Domain d1qx7i_: 1qx7 I: [104638]
        apocalmodulin; oligomer with swapped EF-hand units
      4. 768944Domain d1qx7m_: 1qx7 M: [104639]
        apocalmodulin; oligomer with swapped EF-hand units
      5. 768945Domain d1qx7r_: 1qx7 R: [104640]
        apocalmodulin; oligomer with swapped EF-hand units
    5. Domain for 3cln:
  11. 768946Rattus norvegicus [TaxId:10116] [158477] (2 PDB entries)
    1. Domain for 2pq3:
    2. Domain for 3b32:

More info for Protein Calmodulin from a.39.1.5: Calmodulin-like

Timeline for Protein Calmodulin from a.39.1.5: Calmodulin-like: