SCOPe 2.08: Protein: Signal sequence recognition protein Ffh

Lineage for Protein: Signal sequence recognition protein Ffh

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.24: Four-helical up-and-down bundle [47161] (29 superfamilies)
core: 4 helices; bundle, closed or partly opened, left-handed twist; up-and-down
Superfamily a.24.13: Domain of the SRP/SRP receptor G-proteins [47364] (2 families)
Family a.24.13.1: Domain of the SRP/SRP receptor G-proteins [47365] (3 proteins)
Protein Signal sequence recognition protein Ffh [47366] (3 species)

Species:

Acidianus ambivalens [TaxId:2283] [63538] (2 PDB entries)
1. Domain for 1j8m:
  - Domain d1j8mf1: 1j8m F:3-86 [62742]
    Other proteins in same PDB: d1j8mf2, d1j8mf3
2. Domain for 1j8y:
  - Domain d1j8yf1: 1j8y F:3-86 [62747]
    Other proteins in same PDB: d1j8yf2, d1j8yf3
    mutant
Sulfolobus solfataricus [TaxId:2287] [101121] (3 PDB entries)
1. Domains for 1qzw:
  1. Domain d1qzwa1: 1qzw A:1-87 [96699]
    Other proteins in same PDB: d1qzwa2, d1qzwa3, d1qzwc2, d1qzwc3, d1qzwe2, d1qzwe3, d1qzwg2, d1qzwg3
    protein/RNA complex
  2. Domain d1qzwc1: 1qzw C:1-87 [96702]
    Other proteins in same PDB: d1qzwa2, d1qzwa3, d1qzwc2, d1qzwc3, d1qzwe2, d1qzwe3, d1qzwg2, d1qzwg3
    protein/RNA complex
  3. Domain d1qzwe1: 1qzw E:1-87 [96705]
    Other proteins in same PDB: d1qzwa2, d1qzwa3, d1qzwc2, d1qzwc3, d1qzwe2, d1qzwe3, d1qzwg2, d1qzwg3
    protein/RNA complex
  4. Domain d1qzwg1: 1qzw G:1-87 [96708]
    Other proteins in same PDB: d1qzwa2, d1qzwa3, d1qzwc2, d1qzwc3, d1qzwe2, d1qzwe3, d1qzwg2, d1qzwg3
    protein/RNA complex
2. Domains for 1qzx:
  1. Domain d1qzxa1: 1qzx A:1-87 [96711]
    Other proteins in same PDB: d1qzxa2, d1qzxa3, d1qzxb2, d1qzxb3
  2. Domain d1qzxb1: 1qzx B:1-87 [96714]
    Other proteins in same PDB: d1qzxa2, d1qzxa3, d1qzxb2, d1qzxb3
3. Domain for 2iy3:
  - Domain d2iy3a1: 2iy3 A:1-88 [137790]
    Other proteins in same PDB: d2iy3a2
    automatically matched to d2ffha1
    protein/RNA complex

Thermus aquaticus [TaxId:271] [47367] (16 PDB entries)

Domain for 1ffh:
- Domain d1ffha1: 1ffh A:2-88 [16960]
  Other proteins in same PDB: d1ffha2
  complexed with mg
Domain for 1jpj:
- Domain d1jpja1: 1jpj A:1-88 [67024]
  Other proteins in same PDB: d1jpja2
  complexed with gnp
Domains for 1jpn:
1. Domain d1jpna1: 1jpn A:1-88 [67039]
  Other proteins in same PDB: d1jpna2, d1jpnb2
  complexed with acy, ca, gnp
2. Domain d1jpnb1: 1jpn B:1-88 [67041]
  Other proteins in same PDB: d1jpna2, d1jpnb2
  complexed with acy, ca, gnp
Domain for 1ls1:
- Domain d1ls1a1: 1ls1 A:1-88 [78170]
  Other proteins in same PDB: d1ls1a2
  complexed with mg, oxy
Domain for 1ng1:
- Domain d1ng1a1: 1ng1 A:1-88 [16961]
  Other proteins in same PDB: d1ng1a2
  complexed with acy, cd, edo, gdp, mg
Domains for 1o87:
1. Domain d1o87a1: 1o87 A:1-88 [92640]
  Other proteins in same PDB: d1o87a2, d1o87b2
  protein/RNA complex; complexed with cl, fmt, gdp, mg
2. Domain d1o87b1: 1o87 B:1-88 [92642]
  Other proteins in same PDB: d1o87a2, d1o87b2
  protein/RNA complex; complexed with cl, fmt, gdp, mg
Domain for 1okk:
- Domain d1okka1: 1okk A:4-88 [93259]
  Other proteins in same PDB: d1okka2, d1okkd1, d1okkd2
  complexed with bzp, edo, gcp, mg, so4
Domain for 1rj9:
- Domain d1rj9b1: 1rj9 B:14-88 [97555]
  Other proteins in same PDB: d1rj9a1, d1rj9a2, d1rj9b2
  complexed with gcp, mg
Domains for 2c04:
1. Domain d2c04a1: 2c04 A:1-88 [129570]
  Other proteins in same PDB: d2c04a2, d2c04b2
  automated match to d1o87a1
  protein/RNA complex; complexed with ca, gcp
2. Domain d2c04b1: 2c04 B:1-88 [129572]
  Other proteins in same PDB: d2c04a2, d2c04b2
  automated match to d1o87a1
  protein/RNA complex; complexed with ca, gcp

Domains for 2cnw:

Domain d2cnwa1: 2cnw A:4-88 [130649]
Other proteins in same PDB: d2cnwa2, d2cnwb2, d2cnwc2, d2cnwd1, d2cnwd2, d2cnwe1, d2cnwe2, d2cnwf1, d2cnwf2
automated match to d1okka1
protein/RNA complex; complexed with 5gp, alf, gdp, mg

Domain d2cnwb1: 2cnw B:4-88 [130651]
Other proteins in same PDB: d2cnwa2, d2cnwb2, d2cnwc2, d2cnwd1, d2cnwd2, d2cnwe1, d2cnwe2, d2cnwf1, d2cnwf2
automated match to d1okka1
protein/RNA complex; complexed with 5gp, alf, gdp, mg

Domain d2cnwc1: 2cnw C:4-88 [130653]
Other proteins in same PDB: d2cnwa2, d2cnwb2, d2cnwc2, d2cnwd1, d2cnwd2, d2cnwe1, d2cnwe2, d2cnwf1, d2cnwf2
automated match to d1okka1
protein/RNA complex; complexed with 5gp, alf, gdp, mg

Domains for 2ffh:
1. Domain d2ffha1: 2ffh A:1-88 [16965]
  Other proteins in same PDB: d2ffha2, d2ffha3, d2ffhb2, d2ffhb3, d2ffhc2, d2ffhc3
  complexed with cd, so4
2. Domain d2ffhb1: 2ffh B:1-88 [16966]
  Other proteins in same PDB: d2ffha2, d2ffha3, d2ffhb2, d2ffhb3, d2ffhc2, d2ffhc3
  complexed with cd, so4
3. Domain d2ffhc1: 2ffh C:1-88 [16967]
  Other proteins in same PDB: d2ffha2, d2ffha3, d2ffhb2, d2ffhb3, d2ffhc2, d2ffhc3
  complexed with cd, so4
Domains for 2j45:
1. Domain d2j45a1: 2j45 A:1-88 [137983]
  Other proteins in same PDB: d2j45a2, d2j45b2
  automated match to d1o87a1
  complexed with ca, edo, mes, mrd, na
2. Domain d2j45b1: 2j45 B:1-88 [137985]
  Other proteins in same PDB: d2j45a2, d2j45b2
  automated match to d1o87a1
  complexed with ca, edo, mes, mrd, na
Domains for 2j46:
1. Domain d2j46a1: 2j46 A:1-88 [137987]
  Other proteins in same PDB: d2j46a2, d2j46b2
  automated match to d1o87a1
  complexed with act, cl, mn, mrd
2. Domain d2j46b1: 2j46 B:1-88 [137989]
  Other proteins in same PDB: d2j46a2, d2j46b2
  automated match to d1o87a1
  complexed with act, cl, mn, mrd
Domains for 2j7p:
1. Domain d2j7pa1: 2j7p A:3-88 [138119]
  Other proteins in same PDB: d2j7pa2, d2j7pb2, d2j7pd1, d2j7pd2, d2j7pe1, d2j7pe2
  automated match to d1ng1a1
  protein/RNA complex; complexed with edo, gnp, iod, k, mg
2. Domain d2j7pb1: 2j7p B:4-88 [138121]
  Other proteins in same PDB: d2j7pa2, d2j7pb2, d2j7pd1, d2j7pd2, d2j7pe1, d2j7pe2
  automated match to d1ng1a1
  protein/RNA complex; complexed with edo, gnp, iod, k, mg
Domain for 2ng1:
- Domain d2ng1a1: 2ng1 A:2-88 [16962]
  Other proteins in same PDB: d2ng1a2
  complexed with dio, edo, gdp
Domains for 3ng1:
1. Domain d3ng1a1: 3ng1 A:1-88 [16963]
  Other proteins in same PDB: d3ng1a2, d3ng1b2
  complexed with cd, edo, so4
2. Domain d3ng1b1: 3ng1 B:1-88 [16964]
  Other proteins in same PDB: d3ng1a2, d3ng1b2
  complexed with cd, edo, so4

More info for Protein Signal sequence recognition protein Ffh from a.24.13.1: Domain of the SRP/SRP receptor G-proteins

Timeline for Protein Signal sequence recognition protein Ffh from a.24.13.1: Domain of the SRP/SRP receptor G-proteins:

Protein Signal sequence recognition protein Ffh from a.24.13.1: Domain of the SRP/SRP receptor G-proteins first appeared (with stable ids) in SCOP 1.55, called Protein Signal sequence recognition protein Ffh from a.29.1.1: Domain of the SRP/SRP receptor G-proteins
Protein Signal sequence recognition protein Ffh from a.24.13.1: Domain of the SRP/SRP receptor G-proteins appears in SCOPe 2.07